Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00635 ATGAGAGGAAGGTGCAAATGCCTCGGGGGGTGGGGGGAACCGGTTCCGTACAGGAACTGGTCACTCATAAGCAAATCCATCCCGGGCCGCTCCGGCAAGTCTTGCAGGCTCCGATGGTGCAACCAGCTCTCCCCACAGGTGGAGCATCGGGCCTTCACCCCCGAAGAGGACGACACCATAATCAGAGCTCACGCTCGCTTCGGCAACAAGTGGGCTACCATAGCCCGACTCCTCTCCGGCAGAACCGACAACGCCATTAAGAACCACTGGAACTCCACCCTCAAACGCAAGTGCGCCTCCATGGGCCCCATCGACGACCCTCACTTCGCTCAGCCACTCAAACGCTCCGTCAGCGCCGGCGCCGCCGTACCCGTATCAACGGGCCTCTACATGAACCCTCCCACACCCGGAAGCCCCTCCGGATCCGATGTGAGCGAGTCAAGCGTCCCCGCTGCCTCCACATCGCACGTTTTCCGACCTGTGCCTAGAGCCGGCGGTGTCGTACCGCCGGTAGAAACGACGTCGTCTTCCTATGACCCTCCCACTTCATTGTCCCTTTCCCTCCCCGGGGTCGACTCTAATTCGGAAGTCTCGAATCGTGGCAACGAACCGTCGCCTCACTCGGCGCCGCCGTTGACTGCCATACCTCTGTTGCCAATAATGTCGGCTGCTGTATCCGCGACGGTGGCGGCCGTTCCAGCGGTAACTGCCACAGCTCCAGGTGCTGCTCCGTTGGCTGCACAGCCGTTACAGCAAATTCGCGATCCATCGGCTGTGGCTGCGGTGCCGAAGCAGAATAATGGAGCGGCTCCATTCAACTTTAGTGCTGAGCTTTTGGCGGTGATGCAAGATATGATAAGGAAGGAAGTGAGGAGTTATATGGCTGGATTAGAGCAGCAAAGTAACAATAATGGGATGTGTTTTCAGGCTGCTGATGGTGGCTTTAGGAACGCTTCCGTTAAGCGAATTGGGATTAGCAGGATCGATTCGTAA 993 0.5811 MRGRCKCLGGWGEPVPYRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASMGPIDDPHFAQPLKRSVSAGAAVPVSTGLYMNPPTPGSPSGSDVSESSVPAASTSHVFRPVPRAGGVVPPVETTSSSYDPPTSLSLSLPGVDSNSEVSNRGNEPSPHSAPPLTAIPLLPIMSAAVSATVAAVPAVTATAPGAAPLAAQPLQQIRDPSAVAAVPKQNNGAAPFNFSAELLAVMQDMIRKEVRSYMAGLEQQSNNNGMCFQAADGGFRNASVKRIGISRIDS 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00635 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 44 98 IPR017930 -
Adu05g00635 330 MobiDBLite consensus disorder prediction 131 154 - -
Adu05g00635 330 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 43 IPR017930 -
Adu05g00635 330 ProSiteProfiles Myb-like domain profile. 12 43 IPR001005 -
Adu05g00635 330 ProSiteProfiles Myb-like domain profile. 44 94 IPR001005 -
Adu05g00635 330 SUPERFAMILY Homeodomain-like 22 98 IPR009057 -
Adu05g00635 330 CDD SANT 18 41 IPR001005 -
Adu05g00635 330 PANTHER MYB PROTEIN-RELATED 18 296 - -
Adu05g00635 330 CDD SANT 51 94 IPR001005 -
Adu05g00635 330 MobiDBLite consensus disorder prediction 170 206 - -
Adu05g00635 330 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 18 296 - -
Adu05g00635 330 Pfam Myb-like DNA-binding domain 19 43 IPR001005 -
Adu05g00635 330 Pfam Myb-like DNA-binding domain 51 93 IPR001005 -
Adu05g00635 330 SMART sant 48 96 IPR001005 -
Adu05g00635 330 SMART sant 7 45 IPR001005 -
Adu05g00635 330 MobiDBLite consensus disorder prediction 128 210 - -
Adu05g00635 330 Gene3D - 50 111 - -
Adu05g00635 330 Gene3D - 11 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00635 Adu-Chr5 7163866 7166013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00635 18 329 MYB Transcription Factor Family AT4G37260 47.024 1.91e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu05g00635 Myb_DNA-binding 2.8e-14 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g00635 05 7163866 7166013 Adu01g01034 01 15864800 15866412 ECH
Adu06g03144 06 109658763 109659845 Adu05g00635 05 7163866 7166013 ECH
Adu05g00635 05 7163866 7166013 Adu05g00635 05 7163866 7166013 ECH
Adu01g01034 01 15864800 15866412 Adu05g00635 05 7163866 7166013 PCT