Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu05g00048 ATGATAAAAGAACAAGGTGGTGGTGGTGGTGGCGGTGGGAGCAAGAAAAGCACTACATCGGGTTCCAGCGCAACCACGTCATCACAGCAACAAGAACAACAAGCATCAGTGGCTGCTCTAAAGTGTCCAAGATGCGATTCACCAAACACAAAATTCTGTTACTACAACAACTACAGCCTCACGCAGCCACGTCACTTCTGCAAGACTTGCCGAAGGTACTGGACCAAAGGCGGTGCCTTGAGGAACGTTCCCATTGGCGGAGGCTGCCGTAAGAACAAGAAGCTCAATAAGTCTTCAAGATTACTCTCTTCTCCCTCATCTGACTCCCCTGGAGTAGGATCTTCTTCAGACCTTGCTGTTCTTGGTGGTGGTCTTAAGTTCCTCCATGGTCTCGCTTCTTCAGTTCCCGTACCTCCTTCTCTTGATTTTCACCTTGGCGGTGGTGGTGGTGGTGCAATCGAGGGGATAAGCTCCGCCATGAACGCCCATCATCATGGTAGTAGTAATAACATTGCTTCTTCTATTGAGTCGTTGAGTTCTATGAACCAGGACTTGCACTGGAAGCTACAACAGCAAAGGTTGGCCATGCTTTTTGGCGGTGGTGGCAGCGGAGATGATGCCAACAATAATCAACAAAAAGACGTTGCCGCCGGCGGCGGCGGCGGCGGTGGACTCGAGAAGCCGCAACCGATTTTGTTTCAGAATCTTGACGGTTCTTCAATCAACAGAAAAGAAGAAAATACCGTAATTGCCCCAACTGAGTGGTTCTTTGGAAACTCTTATCCCTCGGTGAATCCTACACCAACCACAAGTACCGGCGGTGGCAGCGGCGGCGGCGGTGGTGCTGCCGGCAATGATAACGGAATGAATTGGGTTGGTGTTTGTTGGGGTGACGTGCAGCATCAGTACAGTGCTTTGCCCTAG 924 0.5076 MIKEQGGGGGGGGSKKSTTSGSSATTSSQQQEQQASVAALKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKLNKSSRLLSSPSSDSPGVGSSSDLAVLGGGLKFLHGLASSVPVPPSLDFHLGGGGGGAIEGISSAMNAHHHGSSNNIASSIESLSSMNQDLHWKLQQQRLAMLFGGGGSGDDANNNQQKDVAAGGGGGGGLEKPQPILFQNLDGSSINRKEENTVIAPTEWFFGNSYPSVNPTPTTSTGGGSGGGGGAAGNDNGMNWVGVCWGDVQHQYSALP 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu05g00048 307 MobiDBLite consensus disorder prediction 12 33 - -
Adu05g00048 307 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 132 307 IPR045174 GO:0003700|GO:0006355
Adu05g00048 307 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 16 100 IPR045174 GO:0003700|GO:0006355
Adu05g00048 307 MobiDBLite consensus disorder prediction 261 276 - -
Adu05g00048 307 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 132 307 - -
Adu05g00048 307 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 16 100 - -
Adu05g00048 307 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Adu05g00048 307 MobiDBLite consensus disorder prediction 200 230 - -
Adu05g00048 307 MobiDBLite consensus disorder prediction 98 114 - -
Adu05g00048 307 MobiDBLite consensus disorder prediction 96 115 - -
Adu05g00048 307 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Adu05g00048 307 MobiDBLite consensus disorder prediction 261 284 - -
Adu05g00048 307 MobiDBLite consensus disorder prediction 1 33 - -
Adu05g00048 307 Pfam Dof domain, zinc finger 39 94 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu05g00048 Adu-Chr5 527103 528115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu05g00048 20 307 C2C2-Dof Transcription Factor Family AT5G65590 39.883 1.62e-58 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Adu05g00048 zf-Dof 4.9e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu05g00048 - - ahf:112747350 431.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g00048 05 527103 528115 Adu10g01384 10 48678251 48681923 PCT