Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g02979 ATGGGAAGAGGTAGGGTTCAGCTGAAGCGGATCGAGAACAAAACAAGCCAGCAAGTCACGTTTTCGAAGAGGAGAACGGGGCTTCTCAAGAAAGCACACGAAATCTCTGTGCTTTGTGATGCTCAGGTTGCATTGATTATGTTCTCTACCAAAGGAAAACTCTTTGAGTATTCTTCTGAATCCAGCATGGAAGACATTCTGGAACGATATGAGAGACAGGCTCATGCTGAATTTGCTAGCACAAACGATGAGCCACAGCTCACCGCCAAAATTGAAGTATTAGAGAAGAACATTAGGAATTTTGTGGGAAATGATCTTGACCCTTTGAGTTTGAGAGAGCTTCAAAGTTTGGAGCAGCAGCTTGATGCATCTCTAAAGCGTATCCGAATAAGAAAGGTGATGATCATGAACACTGCTTCCCATTTTTCACCTTTagcaaaaATGAAAGATAAAGAGAAGACAATGAGTGAAGGTCCACAAGTCTGCCTTGAAACTCTGGGAAAAAGTACACCTAACATCAACTTGTCTTCTCAAGATCACCTACCACCACAAAGACTAGTTCCTTGTCTAAATCTCAGTGGGACAATACTGGAAGAAACAGCTGAAGCTCAAGATGGTGCTGGTGGCAGCACTGTAATCCCACCATGGATGCTTCAACATTTGACAAGCTAA 672 0.4256 MGRGRVQLKRIENKTSQQVTFSKRRTGLLKKAHEISVLCDAQVALIMFSTKGKLFEYSSESSMEDILERYERQAHAEFASTNDEPQLTAKIEVLEKNIRNFVGNDLDPLSLRELQSLEQQLDASLKRIRIRKVMIMNTASHFSPLAKMKDKEKTMSEGPQVCLETLGKSTPNINLSSQDHLPPQRLVPCLNLSGTILEETAEAQDGAGGSTVIPPWMLQHLTS 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g02979 223 Pfam K-box region 83 154 IPR002487 GO:0003700|GO:0005634|GO:0006355
Adu04g02979 223 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Adu04g02979 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Adu04g02979 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Adu04g02979 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Adu04g02979 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Adu04g02979 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Adu04g02979 223 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Adu04g02979 223 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN FUL-L 1 156 - -
Adu04g02979 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Adu04g02979 223 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Adu04g02979 223 PANTHER MADS BOX PROTEIN 1 156 - -
Adu04g02979 223 ProSiteProfiles K-box domain profile. 77 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g02979 Adu-Chr4 118042519 118054396 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Adu04g02979 K-box 5.5e-16 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g02979 04 118042519 118054396 Adu04g02979 04 118042519 118054396 ECH
Adu03g04552 03 134867132 134870461 Adu04g02979 04 118042519 118054396 ECH
Adu04g02979 04 118042519 118054396 Adu10g02465 10 100694802 100706055 PCT