Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu04g02978 ATGGGGAGGGGAAGAGTTGAGTTGAAGAGGATAGAGAACAAGATAAACAGGCAAGTCACATTTGCAAAGAGAAGAAATGGTCTTCTCAAGAAAGCTTATGAGTTATCTGTTCTTTGTGATGCTGAGGTTGCCCTCATCATCTTCTCCAACAGAGGAAAACTCTATGAGTTTTGTAGCAGCTCTAGCATGCTCAAAACACTCGAGAGGTATCAGAAGTGCAGTTATGGTGCTGTGGAAGTTAGCAAGCCTGCCAAAGAACTTGAGAATAGCTATCGTGAGTACTTGAAGCTGAAAGCAAGATTTGAATCTCTTCAAAGGACTCAAAGAAATCTTCTAGGGGAAGATTTGGGCCCATTGGGTACCAAAGATCTTGAGCAACTTGAAAGGCAATTGGATTCTTCTCTGAAGCAAGTGAGATCCACAAAGACACAATTTATGCTGGATCAATTAACTGATCTTCAAAATAAGGAGCAGATCTTGGTAGATGTCAACAGAACCTTGAGCATGAAGCTGGATGAAATCAATTCAAGGAATCAATATAGGCAGCAATCATGGGAAGCTGGTGATCAAAGTATGCATCAATATACTGCTCCACATAATGCTCACTCTTCTCAAGGCTTCTTCCAGCCTCTGGAATGCAACCCCACTTTGCAGATTGGCAGTGACTATAGGTACAATGGGGTAGGGTCAGATCAGATAACTGCTACAACAACAACTCAAGCTCAACAAGTGAGTGGTTTCATCCCTGGATGGATGCTTTGA 762 0.4226 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCSYGAVEVSKPAKELENSYREYLKLKARFESLQRTQRNLLGEDLGPLGTKDLEQLERQLDSSLKQVRSTKTQFMLDQLTDLQNKEQILVDVNRTLSMKLDEINSRNQYRQQSWEAGDQSMHQYTAPHNAHSSQGFFQPLECNPTLQIGSDYRYNGVGSDQITATTTTQAQQVSGFIPGWML 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu04g02978 253 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Adu04g02978 253 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Adu04g02978 253 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Adu04g02978 253 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Adu04g02978 253 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Adu04g02978 253 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Adu04g02978 253 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Adu04g02978 253 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Adu04g02978 253 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Adu04g02978 253 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Adu04g02978 253 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Adu04g02978 253 Coils Coil 84 107 - -
Adu04g02978 253 Coils Coil 124 144 - -
Adu04g02978 253 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Adu04g02978 253 PANTHER DEVELOPMENTAL PROTEIN SEPALLATA 1 1 239 - -
Adu04g02978 253 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu04g02978 Adu-Chr4 118028637 118034031 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Adu04g02978 K-box 1.9e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu04g02978 04 118028637 118034031 Adu04g02978 04 118028637 118034031 ECH
Adu04g02978 04 118028637 118034031 Adu01g03182 01 103739327 103746640 ECH
Adu04g02978 04 118028637 118034031 Adu10g02179 10 94750387 94758519 ECH
Adu10g02464 10 100658982 100666087 Adu04g02978 04 118028637 118034031 PCT