Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g04552 ATGGGAAGGGGAAGGGTAGAGTTGAAGAGAATTGAGAACAAGATCAACAGGCAAGTGACCTTTGCAAAGAGAAGAAACGGGCTACTGAAGAAGGCGTATGAGCTTTCAGTTCTTTGTGATGCTGAGGTTGCTCTCATCATCTTCTCCAATAGGGGAAAACTGTACGAGTTTTGCAGCAGTTCAAGCATGCTGAAAACACTAGAGAGGTACCAGAAATGTAACTATGGAGCACCGGAAACTAATGTGTCAACTAGGGAAGCCTTGGTAATGGAATTAAGCAGTCAACAAGAATACTTGAAGCTGAAGGCACGTTATGAAGCCCTACAAAGGTCCCAGAGAAACCTGATGGGAGAAGATCTTGGCCCTCTAAGCAGCAAAGAGCTGGAGTCACTGGAAAGGCAGCTAGATTCGTCGTTGAAGCTAATCAGATCCACAAGGACCCAATTCATGCTGGATCAGCTATCGGAACTTCAACGTAAGGAACACTTGCTAAGTGAGGCTAACAGGGCTCTCAGACAAAGGTTGGAAGGGTATCAAATAAATCCAATGCAGCTGAATCCTGGTGGTGTTGATGATATGGGATATGCCCGCCATCCACCTCAACCTCAGCCCGATCCTCTTTTCCAGCAATTGGATTGTGAGCCTACCTTACAAATTGGATATCAGCCTGATCCAGTATCAGTGGTGACGGCAGGCCCAAGCATGGGCAATTACATGGGAGGATGGCTACCATAG 735 0.4667 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPETNVSTREALVMELSSQQEYLKLKARYEALQRSQRNLMGEDLGPLSSKELESLERQLDSSLKLIRSTRTQFMLDQLSELQRKEHLLSEANRALRQRLEGYQINPMQLNPGGVDDMGYARHPPQPQPDPLFQQLDCEPTLQIGYQPDPVSVVTAGPSMGNYMGGWLP 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g04552 244 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Adu03g04552 244 Coils Coil 154 174 - -
Adu03g04552 244 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Adu03g04552 244 ProSiteProfiles K-box domain profile. 91 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Adu03g04552 244 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Adu03g04552 244 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Adu03g04552 244 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Adu03g04552 244 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Adu03g04552 244 Pfam K-box region 93 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Adu03g04552 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Adu03g04552 244 SUPERFAMILY SRF-like 2 77 IPR036879 GO:0003677|GO:0046983
Adu03g04552 244 Coils Coil 128 148 - -
Adu03g04552 244 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL9 HOMOLOG 1 231 - -
Adu03g04552 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 231 - -
Adu03g04552 244 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Adu03g04552 244 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g04552 Adu-Chr3 134867132 134870461 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Adu03g04552 K-box 3.3e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g04552 03 134867132 134870461 Adu03g04552 03 134867132 134870461 ECH
Adu03g04552 03 134867132 134870461 Adu04g02979 04 118042519 118054396 ECH