Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g01968 ATGATGAGAAACAATGTGCAGCAGCAGCAGGAGTTCAAAGATTCAGCTCTTAAGATGATCTCATTGTGCTCCCTAATTATTGTAGGTGTAGTTGAAACAAAATCAACAATAGAACCATGCAACTCCTCCCAGGCATGCCCCTCACTTCTCTCATACCTCTTGCCATGGGACTCAATGCTATCCGAAATAGCAACACGCTTCAACGTGAACGTCTCAGATATCATGGCCGCAAACTCTGCCTTCCCAATAACAGCATCGTGCGGCAACGAAATCGTGAGAGCAGGATCAACGGTGAAGATACCAGCCACGTGTCAGTGCGTGGATGGAATCAGAAGGTCGGTGTCAGCAGTGTACAGGGTGAAAGCATCGGACACACTGGAATCGATATCAGAGGGTTATGGAGCGCTTGTTACTGCAGATCAAATTAGGAGTTTCAACAAAGGCGTGCCTTTGATGGATGGAGATGTGGTAGTTATACCGTTGCCGTGCAGTTGCATGAAGAACCAGAATAATGGGGAAAGTGCGGTTTATATGTCCTATGTGGTTCAGAAAGGGGAGACACTGGGAAGCGTGGCGGCTTATTTTGGTACAACTGTTTCTGATTTGGAATTTGTTAACGGTCTTGGACAACCTACCGTTCTACCTGGCGATATTCTATCGATTCCTATTCCAGCATGTTCATCAGCTACTCTGAATTGGTACAATGAGAATTTGATAGTCCCAAATGGCTCATATGCTTTAACTGCCACCAACTGTATTAAATGCACTTGTGCTCCACAGGGTCTCAAGATGCAATGTTTTCCTTCTGGAATGGATGTACCTTGCTATAATTTACGTTGCAAGGGATCCAATCTTGCTATTGGGGATGAACATCTGGAATATTCCAATGCTGGATGCAATGTCACCCAATGTGTGTACCGTGGCCATAGGGGTGGAAAAATTCTGAGTAGTCTGATAAACTCTTCTTATCTGCAATGTCCGGATAATAAAAGCTCTAGTGGAGCAACATGTTGGCAACCCTCAGCACCATATTTGGCAGACCCATTTGTTTTGTCTCCAGGCCCAAGCCCAAGCCTATTCCCCTTGCCTGTTTCTGAGGCTGCTCTAATGACTCATGCCTATAACTATGACTATGACCATGAGAGAAGGCTCCATCTGTTCTCACTCATCTGTCGTATGCTACACTTGTTATTCCCAATGCTTCTACTTTGTTTTTTAATCTGA 1224 0.4485 MMRNNVQQQQEFKDSALKMISLCSLIIVGVVETKSTIEPCNSSQACPSLLSYLLPWDSMLSEIATRFNVNVSDIMAANSAFPITASCGNEIVRAGSTVKIPATCQCVDGIRRSVSAVYRVKASDTLESISEGYGALVTADQIRSFNKGVPLMDGDVVVIPLPCSCMKNQNNGESAVYMSYVVQKGETLGSVAAYFGTTVSDLEFVNGLGQPTVLPGDILSIPIPACSSATLNWYNENLIVPNGSYALTATNCIKCTCAPQGLKMQCFPSGMDVPCYNLRCKGSNLAIGDEHLEYSNAGCNVTQCVYRGHRGGKILSSLINSSYLQCPDNKSSSGATCWQPSAPYLADPFVLSPGPSPSLFPLPVSEAALMTHAYNYDYDHERRLHLFSLICRMLHLLFPMLLLCFLI 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g01968 407 ProSiteProfiles LysM domain profile. 178 221 IPR018392 -
Adu03g01968 407 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 16 402 - -
Adu03g01968 407 CDD LysM 55 100 IPR018392 -
Adu03g01968 407 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 1 16 402 - -
Adu03g01968 407 Pfam LysM domain 118 147 IPR018392 -
Adu03g01968 407 Pfam LysM domain 60 101 IPR018392 -
Adu03g01968 407 Pfam LysM domain 180 222 IPR018392 -
Adu03g01968 407 CDD LysM 179 221 IPR018392 -
Adu03g01968 407 Gene3D LysM domain 163 232 IPR036779 -
Adu03g01968 407 SUPERFAMILY LysM domain 178 223 IPR036779 -
Adu03g01968 407 CDD LysM 117 149 IPR018392 -
Adu03g01968 407 SMART LysM_2 60 101 IPR018392 -
Adu03g01968 407 SMART LysM_2 179 222 IPR018392 -
Adu03g01968 407 SMART LysM_2 117 160 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g01968 Adu-Chr3 35913432 35915349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu03g01968 34 359 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 41.543 8.59e-74 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu03g01968 - - gmx:100819382 473.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g01968 03 35913432 35915349 Adu03g01968 03 35913432 35915349 ECH