Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu03g00521 ATGGAACTCTTTCTCTTCTCTCTCTTCTCTCTCCTCTTTTTGTTTCTCTCTCCGATATCGTCGGAGGAGGACGGTGGTGCTGACGACGCCTTAATCCGCCAGGTGGTTGGTGACGGCGACGGCGACGGCGACGCGCATTTGTTGGGAGCGGAGCATCACTTCGCCGCCTTCAAGCGGAGATTCGGGAAGGTGTATTCTACGCTGGAGGAGCACGATTACAGGTTCGCGGTGTTCAAGGCTAATATGCACCGCGCGAGAAGACACCAGAGGATGGACCCTTCGGCCGTTCATGGCGTCACGCGGTTCTCTGACATGACGGAATCTGAGTTCAGGAAGAACGTTTTGGGGCTGAGAGGGGTTAGGTTGCCATCTGATGCAAACAAAGCTCCTATTCTGCCAACCGCAGATCTTCCCTCCGATTTTGATTGGAGAGATCATGGAGCTGTTACCCCTGTCAAAAATCAGGGTTCTTGTGGATCGTGTTGGAGTTTCAGCGCAACTGGGGCACTGGAAGGTGCTCATTATCTAGCTACCGGGGAACTTGTTAGTCTCAGTGAACAGCAGCTAGTTGATTGCGATCATGAGTGCGACCCAGATCAACCAGGTTCTTGTGACAAAGGGTGCAATGGTGGATTGATGAACAGCGCTTTTGAATACATCCTTAAATCCGGTGGGATCATGAGAGAGGAAGACTATCCTTATAAGGGTAGTGATCGTGGAACCTGCAAATTCAACAAGACAATGATAGCAGCATCAGTAGCAAACTTCAGTGTAGTTTCACTTGATGAAGACCAGATTGCTGCCAATCTTGTCAAAAATGGCCCTCTTGCAGTGGCTATAAATGCTGTATTTATGCAGACATATATTGGAGGGGTTTCATGCCCGTACATATGCTCAAAGAGGTTGGATCATGGGGTGTTACTGGTGGGATATGGCTCTGGAGGCTATTCTCTGATTCGGATGAAGGAGAAACCATATTGGATCATCAAGAATTCATGGGGAGAAAATTGGGGAGAAAATGGATACTACAAGATTTGCCGTGGACGGAATATCTGTGGGGTGGACTCCTTGGTTTCAACTGTGGCAGCTGTTCATACCACTGCTCATTAG 1110 0.4901 MELFLFSLFSLLFLFLSPISSEEDGGADDALIRQVVGDGDGDGDAHLLGAEHHFAAFKRRFGKVYSTLEEHDYRFAVFKANMHRARRHQRMDPSAVHGVTRFSDMTESEFRKNVLGLRGVRLPSDANKAPILPTADLPSDFDWRDHGAVTPVKNQGSCGSCWSFSATGALEGAHYLATGELVSLSEQQLVDCDHECDPDQPGSCDKGCNGGLMNSAFEYILKSGGIMREEDYPYKGSDRGTCKFNKTMIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVFMQTYIGGVSCPYICSKRLDHGVLLVGYGSGGYSLIRMKEKPYWIIKNSWGENWGENGYYKICRGRNICGVDSLVSTVAAVHTTAH 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu03g00521 369 Pfam Papain family cysteine protease 137 360 IPR000668 GO:0006508|GO:0008234
Adu03g00521 369 SMART pept_c1 137 362 IPR000668 GO:0006508|GO:0008234
Adu03g00521 369 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 326 345 IPR025661 -
Adu03g00521 369 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 155 166 IPR000169 -
Adu03g00521 369 Pfam Cathepsin propeptide inhibitor domain (I29) 54 110 IPR013201 -
Adu03g00521 369 PANTHER CYSTEINE PROTEASE RD19C-RELATED 28 363 - -
Adu03g00521 369 PRINTS Papain cysteine protease (C1) family signature 155 170 IPR000668 GO:0006508|GO:0008234
Adu03g00521 369 PRINTS Papain cysteine protease (C1) family signature 304 314 IPR000668 GO:0006508|GO:0008234
Adu03g00521 369 PRINTS Papain cysteine protease (C1) family signature 326 332 IPR000668 GO:0006508|GO:0008234
Adu03g00521 369 SUPERFAMILY Cysteine proteinases 52 361 IPR038765 -
Adu03g00521 369 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 302 312 IPR025660 -
Adu03g00521 369 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 28 363 - -
Adu03g00521 369 Gene3D Cysteine proteinases 41 362 - -
Adu03g00521 369 CDD Peptidase_C1A 138 361 IPR039417 -
Adu03g00521 369 SMART Inhibitor_I29_2 54 110 IPR013201 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu03g00521 Adu-Chr3 4854884 4856848 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu03g00521 03 4854884 4856848 Adu03g00521 03 4854884 4856848 ECH
Adu06g03158 06 109793829 109798046 Adu03g00521 03 4854884 4856848 ECH