Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu01g01034 ATGGCCATGTCTAGAAGAGAAATGGATCGGATCAAAGGCCCGTGGAGCCCGGAAGAAGATGAGGCTCTGCAGAGGCTGGTGGAGAGGCACGGGCCCAGGAACTGGACGTTGATAAGCAAGTACATCCCGGGCCGCTCCGGGAAGTCCTGCAGGCTAAGATGGTGTAACCAACTGTCACCTCAGGTTGAGCACCGGGGCTTCACGCCCGATGAGGATGAGACGATAATCCGGGCCCATGCCCGGTTCGGTAACAAGTGGGCTACAATAGCCCGACTCCTGTCTGGTCGAACTGACAACGCGGTAAAGAATCACTGGAACTCAACACTCAAGCGCAAGTGCTCATCCATGATGATCGACGAGCCTGCAACAGGTCCGGCAGACTTTGACGGCGGTTACTACCTACGGCCCGCGAAGAGGTCTGCGAGCGCAGGTGCTACCATGCCGCTATCCACCGGGCTTCACATGAGCCCGACGTCGCCGGGAAGCCCGTCGGGATCCGACGCGAGTGATTGCAGCGTTCGCGCTGTCTCTCCGTCGCACGTTCTGAGGCCCGTGCAGAGGACCGTTGTTCCTCCGATCGAAACTGCGTCCTCTTCAGAGGACCCTCCGACGTCGTTGTCGCTGTCTCTGCCTGGCGTAGACGTTGCTGTGGAAGTCTCCAATCGTGTCACGGAATCTATGTCACGTGCCTTTTCTCCGGCGATGGTGATGGCTTCGGCGGCGCCTTCAACGGCTGTAACGACAGCGGATCCGCTGCCATTGCCATCGCCACAACATCAAGTTGTAGCGCCGTTTAATTTTAGCGCGGAGCTGATGGCGGTGATGCAAGAAATGATAAGAAAAGAAGTGAGGAGTTACATGGAACAACGCAATGGGATGTGTTTTCAGGCTGCTGGTGGGTTCAGGAACGTTTCGGTAAATCGAGTTGGGATTAGCAAAGTCAACTCGTGA 951 0.5678 MAMSRREMDRIKGPWSPEEDEALQRLVERHGPRNWTLISKYIPGRSGKSCRLRWCNQLSPQVEHRGFTPDEDETIIRAHARFGNKWATIARLLSGRTDNAVKNHWNSTLKRKCSSMMIDEPATGPADFDGGYYLRPAKRSASAGATMPLSTGLHMSPTSPGSPSGSDASDCSVRAVSPSHVLRPVQRTVVPPIETASSSEDPPTSLSLSLPGVDVAVEVSNRVTESMSRAFSPAMVMASAAPSTAVTTADPLPLPSPQHQVVAPFNFSAELMAVMQEMIRKEVRSYMEQRNGMCFQAAGGFRNVSVNRVGISKVNS 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu01g01034 316 MobiDBLite consensus disorder prediction 147 172 - -
Adu01g01034 316 SMART sant 63 111 IPR001005 -
Adu01g01034 316 SMART sant 11 60 IPR001005 -
Adu01g01034 316 CDD SANT 67 109 IPR001005 -
Adu01g01034 316 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Adu01g01034 316 SUPERFAMILY Homeodomain-like 9 105 IPR009057 -
Adu01g01034 316 PANTHER MYB PROTEIN-RELATED 2 234 - -
Adu01g01034 316 CDD SANT 14 56 IPR001005 -
Adu01g01034 316 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 2 234 - -
Adu01g01034 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 62 IPR017930 -
Adu01g01034 316 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 113 IPR017930 -
Adu01g01034 316 Pfam Myb-like DNA-binding domain 12 58 IPR001005 -
Adu01g01034 316 Pfam Myb-like DNA-binding domain 67 108 IPR001005 -
Adu01g01034 316 ProSiteProfiles Myb-like domain profile. 7 58 IPR001005 -
Adu01g01034 316 Gene3D - 65 124 - -
Adu01g01034 316 Gene3D - 11 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu01g01034 Adu-Chr1 15864800 15866412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu01g01034 4 314 MYB Transcription Factor Family AT4G37260 51.360 1.58e-98 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu01g01034 Myb_DNA-binding 1.1e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu05g00635 05 7163866 7166013 Adu01g01034 01 15864800 15866412 ECH
Adu06g03144 06 109658763 109659845 Adu01g01034 01 15864800 15866412 ECH
Adu01g01034 01 15864800 15866412 Adu01g01034 01 15864800 15866412 ECH
Adu01g01034 01 15864800 15866412 Adu05g00635 05 7163866 7166013 PCT