Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Accr6g01537 | ATGGTTTTTACTTCAATTCCTCCTTATCTTGATCCGGCCAACTGGCAACAACAGCAAAGTAATCACCACCAGACGGGAGCTCTCGCCGGTGGTGGTGGTTTGAGCTCTCAGCAGCATCATAATCAGTATCAGCAGCAGCAGCAGCAACAGCTTCTTTCTCCGCCACACCCTCCTCCGCCTGCGCTGCCTCCACCGCAGCCTCATGGAGGAGGAGGGACGGGTTCGATCAGGCCGGGTTCGATGGCTGATCGAGCCCGGATGGCAAACATACCCATGCCGGAGGCCGCTCTGAAATGCCCAAGATGTGAATCTGCCAACACCAAGTTTTGCTACTTCAACAACTACAGTCTCTCTCAGCCTCGCCACTTCTGCAAGACTTGTCGGAGGTACTGGACCCGTGGCGGAGCCCTGAGGAATGTGCCTGTCGGAGGAGGATGCCGGAGGAACAAGAGATCAAGCAAAGGAAGCAGCTCCAAGTCACCGGCGAGCTCAGATCGTCAAGCTGGAAGCACTTGTTCAACCAACTCAGTTTCTTCTAACAGTAATTCTGCAGGCGACCTAATAGGCCTCACTCCTCACGCACCACCGCTGAGATTCATGTCTCCCTTACTCGCCGATTTCACCGCTGCCGGTGGGGACATGGGGTTAACCTACGGCGTAAATTATAACGCAATTTCAGCACCAATGGGAGGAATGGTCAGCGACTTAAATTTCCAAATAGGAAGTGCTTTTGGCGGAGGCGGAGGAGAAGGAAGTAGTGGGGGCGGGACCACCACAACAGCCGCGGCCGGAAGCAGCGGCGGGTCTATCTTATTCGCTCCGGGTTTAGAGCAATGGCGTATGCCACAAACACAGCAATTTCCTTTCTTGGCTGCTGGACTTGAAGGTTCACATGGATTGTACTCGTTTGAAGGTACCAGCGGAGAAGCACTGGGATATGGTGGCATGAGTCTTCGGCCAAAGGCGACGGCTTCTGGGTTGATCACTCAGCTGGCTTCAGTGAAAATGGAAGACAATAACAACAACAATAATAATCTGAATTTGTCAGGCCAATTTCTGGGGAGTGATCAGTATTGGGGTACTAGTGGTGGTGGAGGTTCTACTTCTGCTTGGACTGATCTTTCTGGGTTTAGCTCATCTTCAACTACTAGCAATCCACTATAG | 1164 | 0.5249 | MVFTSIPPYLDPANWQQQQSNHHQTGALAGGGGLSSQQHHNQYQQQQQQQLLSPPHPPPPALPPPQPHGGGGTGSIRPGSMADRARMANIPMPEAALKCPRCESANTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSSKGSSSKSPASSDRQAGSTCSTNSVSSNSNSAGDLIGLTPHAPPLRFMSPLLADFTAAGGDMGLTYGVNYNAISAPMGGMVSDLNFQIGSAFGGGGGEGSSGGGTTTTAAAGSSGGSILFAPGLEQWRMPQTQQFPFLAAGLEGSHGLYSFEGTSGEALGYGGMSLRPKATASGLITQLASVKMEDNNNNNNNLNLSGQFLGSDQYWGTSGGGGSTSAWTDLSGFSSSSTTSNPL | 387 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Accr6g01537 | 387 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 41 | 182 | IPR045174 | GO:0003700|GO:0006355 | |
| Accr6g01537 | 387 | MobiDBLite | consensus disorder prediction | 155 | 183 | - | - | |
| Accr6g01537 | 387 | ProSitePatterns | Zinc finger Dof-type signature. | 99 | 135 | IPR003851 | GO:0003677|GO:0006355 | |
| Accr6g01537 | 387 | ProSiteProfiles | Zinc finger Dof-type profile. | 97 | 151 | IPR003851 | GO:0003677|GO:0006355 | |
| Accr6g01537 | 387 | MobiDBLite | consensus disorder prediction | 1 | 80 | - | - | |
| Accr6g01537 | 387 | MobiDBLite | consensus disorder prediction | 52 | 67 | - | - | |
| Accr6g01537 | 387 | MobiDBLite | consensus disorder prediction | 10 | 51 | - | - | |
| Accr6g01537 | 387 | MobiDBLite | consensus disorder prediction | 141 | 183 | - | - | |
| Accr6g01537 | 387 | Pfam | Dof domain, zinc finger | 96 | 151 | IPR003851 | GO:0003677|GO:0006355 | |
| Accr6g01537 | 387 | MobiDBLite | consensus disorder prediction | 363 | 387 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Accr6g01537 | Accr-Chr6 | 47900799 | 47902192 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Accr6g01537 | 1 | 380 | C2C2-Dof Transcription Factor Family | AT2G37590 | 37.250 | 3.44e-56 | 186 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | C2C2-Dof | Accr6g01537 | zf-Dof | 2.6e-32 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Accr6g01537 | - | - | gmx:100796820 | 306.99 |