Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01792 ATGTCTCACAAGGATCCGGTTATCAAGCTATTTGGCAGGAAGATTCCCCTACCGGAATGTCAGATTCCGGCGACCTCTCCAATGGCTACTCAGATACCGGTCAACTCCAGAACCATGGATGCTTGCAGTAGCTTGAAGAAAACAGAAGTGGAAAGAGTTTGTGCAGAAAACTCAGAGCAACAAGAGAATGCCTCTGAGTCAGCGGCAAGTAAAGAAGGGTCCCACAACAATCAGCTAGAAAATGAGCCCAAAGTCAATCCCAAGGCTGTAGTCGATAGAGTGGAAACTAGCAGCACAGATCAAGATAAATCATTTAAGAAACCAGACAAGATTCTTCAGTGTCCACGATGCAACAGCTTGGACACAAAGTTTTGTTATTTCAATAACTACAATGTCAATCAGCCTCGACATTTCTGCAAGAACTGCCAAAGGTATTGGACTGCTGGTGGAACAATGAGGAATGTTCCGGTGGGCGCCGGGAGAAGAAAGAACAAGCACCTAGGCTCTCAGTTTCGCCACATTATAGTGTCCTCTGATGGAATTTCAACCTCTAGGTTGGAAACCACGGACTCATCTAGCCACCGACTTATTTCATCTCCTGAATCTTCAGCTGCTTTCAGGTCTTCATCAGTGGCAATGGATAATAATGGTATTGTATTGAAATTTGGTCCAGATGCCCCTCCTCTCTGTGAAACCATGGAGACAATGCTTAATATTAGAGACCAGAAAAGGAAAGTTGATGCAGAAAATGGGAAAGAACAATCTTTATCTGGATCTTCAGTAGCAAATAGTAGTGGTACAGAACTTGTCATGCAAATGGAGCAGTGTGTTCCTCATCAGCTAGGGGCATCAAATCAAATGTCATGTTACCCTGTTCCTCCACTGTTGTTTCCCTGGAATCCAGATTGGAACAATGTTGTTTCTGTGGCTGCAATTCATCAACCTTCGCCGCCAATTCAGTGGTATCCTTCACCGTTGGTGGCAGTTCCCGGCATGTGCCCACCTGGCATTCCTTTACAATATGCACCAACACCGCCATATTGGTCCGCCAGCACCGGGACAGTCTCAATAGGATCTAATGGTTGCCTTTCACCATCATCGTCAACAAGTAATAGTTGCTGCTCAGGCAATGGCTCTCCAACTTTGGGAAAACATTCTAGAGATACGGTCTTGGCAGATGAAGAGAAGTCAGAGAAGTGTGTTCTGGTTCCCAAGACTCCTAGGATTGATGATCCAAATGAAGCTTCAAAAAGTCCTATTGGGCTACATTAG 1272 0.4505 MSHKDPVIKLFGRKIPLPECQIPATSPMATQIPVNSRTMDACSSLKKTEVERVCAENSEQQENASESAASKEGSHNNQLENEPKVNPKAVVDRVETSSTDQDKSFKKPDKILQCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLGSQFRHIIVSSDGISTSRLETTDSSSHRLISSPESSAAFRSSSVAMDNNGIVLKFGPDAPPLCETMETMLNIRDQKRKVDAENGKEQSLSGSSVANSSGTELVMQMEQCVPHQLGASNQMSCYPVPPLLFPWNPDWNNVVSVAAIHQPSPPIQWYPSPLVAVPGMCPPGIPLQYAPTPPYWSASTGTVSIGSNGCLSPSSSTSNSCCSGNGSPTLGKHSRDTVLADEEKSEKCVLVPKTPRIDDPNEASKSPIGLH 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01792 423 ProSiteProfiles Zinc finger Dof-type profile. 112 166 IPR003851 GO:0003677|GO:0006355
Accr5g01792 423 MobiDBLite consensus disorder prediction 57 83 - -
Accr5g01792 423 PANTHER CYCLIC DOF FACTOR 2 4 420 IPR045174 GO:0003700|GO:0006355
Accr5g01792 423 MobiDBLite consensus disorder prediction 374 423 - -
Accr5g01792 423 ProSitePatterns Zinc finger Dof-type signature. 114 150 IPR003851 GO:0003677|GO:0006355
Accr5g01792 423 MobiDBLite consensus disorder prediction 53 106 - -
Accr5g01792 423 Pfam Dof domain, zinc finger 109 166 IPR003851 GO:0003677|GO:0006355
Accr5g01792 423 MobiDBLite consensus disorder prediction 387 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01792 Accr-Chr5 44174390 44176621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01792 1 420 C2C2-Dof Transcription Factor Family AT3G47500 35.892 1.94e-59 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Accr5g01792 zf-Dof 2.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01792 - - ccaj:109792807 504.597