Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr5g01403 ATGTCGGAAGCAAAAGACCCGGCGATCAAGCTCTTCGGAAAGACGATCCCGCTGCCGGAGACACCGGTCGCATCCGGAGGCTCTGCTGGAGCTCTGTCTTCTTCTTCTGGGGATATTGGTGACGATGGTATCGATCACAATCGTGCTTCTCCCACCAACTCATCGCGAGAGTCCAACACGAAGAGGGATGAGGAAGAACAAGAAACTGAGAAGGACACTTTGGGAGAGAATCCAATTGAGAATACGGAGGGTGGAGCCCCCACTCTATCTACAGAAGAGGTCACTAATCCGGATGCAGCCTCAAGAACAGGTGAAGAATCTGATATGCCCCATGCTGAGAAGGATGCTACTACATTGAAGGCTTCAAAATCTGAAGAAGAGCAGAGTGAGACGAGTAATTCGCAAGAGAAGACTTTGAAAAAGCCAGACAAAATACTGCCCTGCCCCCGCTGCAATAGCATGGACACCAAGTTCTGCTACTACAATAATTACAATGTCAACCAACCCCGCCACTTCTGCAAGAACTGTCAGAGATACTGGACCGCTGGTGGAACCATGAGGAACGTGCCTGTGGGCGCTGGTCGTCGAAAGAACAAGAATTCTTCTCACTATCGCCAAATAACTGTCGCTGAAGCACTCCAGGCTGCACAAACAGACATGCCAAATGGAGTACAACATCCTGCCTTGAAGAAGCCCAATGGCACAGTTCTTGCTTTTGGGTCTGATTCACCTTTGTGTGAGTCAATGGCATCTGTATTGAACCTTGGTGATAAAACAATGCAGGACTGCACGAGAAACGGGTTTCATAGACCTGAAGAACTAAGAATTCCTGTTCCCTATGCCAGTGGAGAGAAAGGAGATGATCATTCTAATAAATCCCCTGTGATGTCAACAAAGCCGATAGATGACGCAAGCATCAACAGGCAACAAGAACAAGCAATTCAGAACTGCCAGAGTTTCCCTCCTCAACTTCCTTACTATCCCGGGGCACCTTGGCCTTTCCCATGGAATCCGGTGCAGTGGAGCTCTCCTGTACCACCACCGCCTGCGTTTTGCCCTCCAGGATTCACCATGCCATTCTATCCTGCAGCTGCATATTGGGGTTGTACTGTCTCAGGTGCTTGGAACATACCATGGCTACCTCAACCATCATCACCAAAAAGCATGAGCCCTAATTCTGGCCCGAACTCACCCACCTTAGGTAAACATTCAAGAGAAGAAAACATGCTCAAGATAAATGACTCGGGTGGAGAGGATGAACGTGGTGGTAAAGAAACTGGCAAAGAGAAGTATCTGTGGGTTCCTAAAACTTTGAGGATTGATGACCCAGACGAAGCGGCTAAAAGCTCTATATGGACAACGTTGGGGATTAAAAATGATAAGGCTGAATCAGTTCAAGAGGGAGGACTCTTTAGGGCATTCCCATCAAAGGGTGACGGAAAAGATCACTCAGCACAAAACTCAACAGTCTTGCAGGCCAATCCGGCGGCATTCTCTAGGTCACTCAACTTTCATGAGACCTCGTAA 1527 0.4833 MSEAKDPAIKLFGKTIPLPETPVASGGSAGALSSSSGDIGDDGIDHNRASPTNSSRESNTKRDEEEQETEKDTLGENPIENTEGGAPTLSTEEVTNPDAASRTGEESDMPHAEKDATTLKASKSEEEQSETSNSQEKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSSHYRQITVAEALQAAQTDMPNGVQHPALKKPNGTVLAFGSDSPLCESMASVLNLGDKTMQDCTRNGFHRPEELRIPVPYASGEKGDDHSNKSPVMSTKPIDDASINRQQEQAIQNCQSFPPQLPYYPGAPWPFPWNPVQWSSPVPPPPAFCPPGFTMPFYPAAAYWGCTVSGAWNIPWLPQPSSPKSMSPNSGPNSPTLGKHSREENMLKINDSGGEDERGGKETGKEKYLWVPKTLRIDDPDEAAKSSIWTTLGIKNDKAESVQEGGLFRAFPSKGDGKDHSAQNSTVLQANPAAFSRSLNFHETS 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr5g01403 508 ProSitePatterns Zinc finger Dof-type signature. 148 184 IPR003851 GO:0003677|GO:0006355
Accr5g01403 508 MobiDBLite consensus disorder prediction 104 144 - -
Accr5g01403 508 MobiDBLite consensus disorder prediction 481 508 - -
Accr5g01403 508 MobiDBLite consensus disorder prediction 471 508 - -
Accr5g01403 508 MobiDBLite consensus disorder prediction 384 406 - -
Accr5g01403 508 MobiDBLite consensus disorder prediction 1 145 - -
Accr5g01403 508 MobiDBLite consensus disorder prediction 57 77 - -
Accr5g01403 508 MobiDBLite consensus disorder prediction 83 102 - -
Accr5g01403 508 ProSiteProfiles Zinc finger Dof-type profile. 146 200 IPR003851 GO:0003677|GO:0006355
Accr5g01403 508 Pfam Dof domain, zinc finger 143 200 IPR003851 GO:0003677|GO:0006355
Accr5g01403 508 MobiDBLite consensus disorder prediction 384 403 - -
Accr5g01403 508 PANTHER CYCLIC DOF FACTOR 2 1 508 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr5g01403 Accr-Chr5 40084760 40087689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr5g01403 6 508 C2C2-Dof Transcription Factor Family AT5G39660 45.131 5.59e-116 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Accr5g01403 zf-Dof 3.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr5g01403 - - gmx:100788247 697.197