Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr4g00376 ATGCCGAATAAAAAATCCACCCTGCAAAGCACTATCCTCTTGTTACTTTTGCAGGTTTTGAATTTGATCAATGTCACTCATGTGAGGTGCAAATCTACAATCGAGCCCTGCTCCAGCACTGACTCCTGCAATGCCCTGCTCGGATATACTCTCTACACTGACCTAAAGGTCTCTGAGGTGGCCTCCCTCTTTCAAATCGACCCCATTGCTCTTCTCACTTCCAATGCCATTGACATTTCTTATCCCGACGTGGAGCATCACATCCTTCCCTCTCGTCTCTTCCTCAAAATTCCTATTACTTGTTCGTGTGTTGATGGAATTCGCAAATCAGTATCGACCCACTACAAAACTCGGCCCTCTGATACTCTCTCTTCGATTGCGGATTCGATATATGGGGGTCTGGTGTCTGCTGACCAGCTTAGGGAAGCCAATTCGATAAGTGACCCTTCGGTACTGGATGTGGGTCAGAATCTTGTCGTGCCACTTCCATGCACTTGCTTCAATGGTACCGATAACTCTTTGCCTGCAATCTACCTGTCGTATGTGGTCCAGCCAATCGATACTTTGGCTGCACTTGCCGCGAGGTATTTCACTACTCTGACTGATTTGATGAACGTCAATGCCATGGGAAGTTCAGCTATCGACGATGGCGATATTCTAGCTATACCGATACCCGCTTGCGCATCAAATTTCCCAAATTATGCCGCTGATCATGGTTTGATTGTCCCTAACGGAAGCTATGCTATCACAGCGGGCCACTGTGTGTTATGTAGCTGTGGACCACGAAATTTAAATTTATACTGTATGCCTGCTTCTCTGGCTGTTTCTTGTTCCAGCATGCAATGTAAAAGAAGCAACCTCATGCTCGGAAATGTTACAGTGCAACAGGGTAGTGGTGGTTGCAGGGTTGGTTCTTGTAATTATGACGGTTTTGCTAATGGCACCATATTAACAGCATTGTCTGCATCTCTTCAACCTCGATGCCCAGGGCCGCAGCAATTTCCTCCACTCACAGCACCACCTACTACTGTTCCGAGAGCGTCAATATTTGCACCAGCTCCGTCACCTCTGTCACATGGAGCTGGTCCTTTATCACCCAAATCATCAGTGGTGCCAGCGTCGGGGTCGTTTCCAGGGGTCCAACCTGCAAATGGCCCCATCAGCGGGCTTACTTCTGGGGCTTCCTATGCTTGCTCTTTATTGAATCCTTTGCCTGCCTTGACATCCGCTCTTGTGTTTTCGCTTGTCAAGTTGATGATCTCTATGGTATTGTAA 1275 0.4761 MPNKKSTLQSTILLLLLQVLNLINVTHVRCKSTIEPCSSTDSCNALLGYTLYTDLKVSEVASLFQIDPIALLTSNAIDISYPDVEHHILPSRLFLKIPITCSCVDGIRKSVSTHYKTRPSDTLSSIADSIYGGLVSADQLREANSISDPSVLDVGQNLVVPLPCTCFNGTDNSLPAIYLSYVVQPIDTLAALAARYFTTLTDLMNVNAMGSSAIDDGDILAIPIPACASNFPNYAADHGLIVPNGSYAITAGHCVLCSCGPRNLNLYCMPASLAVSCSSMQCKRSNLMLGNVTVQQGSGGCRVGSCNYDGFANGTILTALSASLQPRCPGPQQFPPLTAPPTTVPRASIFAPAPSPLSHGAGPLSPKSSVVPASGSFPGVQPANGPISGLTSGASYACSLLNPLPALTSALVFSLVKLMISMVL 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr4g00376 424 Gene3D LysM domain 107 170 IPR036779 -
Accr4g00376 424 CDD LysM 180 222 IPR018392 -
Accr4g00376 424 SUPERFAMILY LysM domain 179 224 IPR036779 -
Accr4g00376 424 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 13 332 - -
Accr4g00376 424 SUPERFAMILY LysM domain 113 162 IPR036779 -
Accr4g00376 424 ProSiteProfiles LysM domain profile. 179 222 IPR018392 -
Accr4g00376 424 Gene3D LysM domain 171 231 IPR036779 -
Accr4g00376 424 ProSiteProfiles LysM domain profile. 113 160 IPR018392 -
Accr4g00376 424 SMART LysM_2 180 223 IPR018392 -
Accr4g00376 424 SMART LysM_2 114 161 IPR018392 -
Accr4g00376 424 CDD LysM 113 160 IPR018392 -
Accr4g00376 424 Pfam LysM domain 181 223 IPR018392 -
Accr4g00376 424 Pfam LysM domain 115 161 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr4g00376 Accr-Chr4 3597780 3599967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr4g00376 31 401 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 71.850 0.0 549
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr4g00376 - - gmx:100808966 671.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Accr4g00376 4 3597780 3599967 Accr4g00376 4 3597780 3599967 ECH