Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr1g02236 ATGTCAACAGTGAGAGATCCTGCTATAAAGCTATTTGGTAGAGATATTCCTCTAGATTCAACACGCAACACCGATTCGCCTCAAGTTCTGAACAGGTATGATGAATCAACAATTGAAGGAAATGTTCCTTTCAGAGATGGCAAGCAGCATGATCCTATTGAAGAAGCAGACGGAAACGTTTATAGAAGTCCTACTTCTGAAGTGGAAGCTAAAGTAGTTCATAGAACTAAGGACTACAAGGCTGGTAATAAAGATATGGATCATCAAGAAAAAGTTTTCAAGAAACCGGATAAGGTGCTGCCTTGTCCTCGCTGTAACAGCTTGGACACTAAGTTTTGCTATTTCAATAATTACAATGTCAATCAACCTAGGCATTTCTGCAAAAACTGCCAAAGATATTGGACAGCGGGGGGCATAATTAGAAATGTTCCCGTGGGGGCCGGAAAGCGCAAAAATAAACATTCGCCATTACCTGTTGCCCAAGATATAGCATCTGTTGCCCACACAGAGTCCAATTCTCTTCCTACAGCTTCAGTGCCTAATGGAGGAATAGGAAATAGCCCTAGAATTGGTGAGGAAGCTCCTCTTTGTGAATCCTTGGAAACTGTGTTAAATCTAAAAGGCCAAAAAAAAACTGGAGTTGATTCCACTGTTGGTAATGATAGTGAGGAGAGTGATTTTGAATCCAGGGAAAAGGAATGCTCAGAAAATGAAATTGAGCAGGTAGGTTTGCAACAACACTTAAATGGTTTTAATCCTCTACATCCACTTCATTATTATCCTGTACCTCCCTGGGCGTACCAATGGAATCCATGTTGGAATTCGATGGTATTTAGACCCGGTCCTGCTTATATGGGCTCTGCAACTATGATGGCAGTCCCAGGTTTCACTGCACCAACAATAGAATTATCGGCGGCACCCTTTTATTCGAGTCCCGTGCCAAGCTGGACTGGCCAGAAGGAAGAGTCTCCATTTGCTGGGTCTACATTTAGTGCTTGTTCAGGGACTAAGTCTCCAACATTGGGAAAACATTCAAGGGATGTAAGTACTCAGGCAGGTGATGCAATGAGACAGAATCTTTGGGTACCTAAGACACTGAGAATTAATGACCCAGAAGAAGCTGCAAGGAGTTCTATATGGTCTGCTTTTGGTACAAAGATGGAACATAGCAAACCGATTATCAAAGGCAGTGTTTTTAAATCTTTTGAACCTAAGTCAGAAGGTGCAAGATCTCATACTTCAAATAGTGACCAAATTCTGAGTGCAAACCCTGCTGCTTTTTCTCGCTCAGAATCATTTCAGGAGAGAATGTAA 1314 0.4193 MSTVRDPAIKLFGRDIPLDSTRNTDSPQVLNRYDESTIEGNVPFRDGKQHDPIEEADGNVYRSPTSEVEAKVVHRTKDYKAGNKDMDHQEKVFKKPDKVLPCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGIIRNVPVGAGKRKNKHSPLPVAQDIASVAHTESNSLPTASVPNGGIGNSPRIGEEAPLCESLETVLNLKGQKKTGVDSTVGNDSEESDFESREKECSENEIEQVGLQQHLNGFNPLHPLHYYPVPPWAYQWNPCWNSMVFRPGPAYMGSATMMAVPGFTAPTIELSAAPFYSSPVPSWTGQKEESPFAGSTFSACSGTKSPTLGKHSRDVSTQAGDAMRQNLWVPKTLRINDPEEAARSSIWSAFGTKMEHSKPIIKGSVFKSFEPKSEGARSHTSNSDQILSANPAAFSRSESFQERM 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr1g02236 437 Pfam Dof domain, zinc finger 97 154 IPR003851 GO:0003677|GO:0006355
Accr1g02236 437 MobiDBLite consensus disorder prediction 169 191 - -
Accr1g02236 437 MobiDBLite consensus disorder prediction 408 430 - -
Accr1g02236 437 MobiDBLite consensus disorder prediction 209 231 - -
Accr1g02236 437 MobiDBLite consensus disorder prediction 404 437 - -
Accr1g02236 437 MobiDBLite consensus disorder prediction 40 57 - -
Accr1g02236 437 MobiDBLite consensus disorder prediction 169 183 - -
Accr1g02236 437 ProSitePatterns Zinc finger Dof-type signature. 102 138 IPR003851 GO:0003677|GO:0006355
Accr1g02236 437 MobiDBLite consensus disorder prediction 40 59 - -
Accr1g02236 437 PANTHER CYCLIC DOF FACTOR 2 4 436 IPR045174 GO:0003700|GO:0006355
Accr1g02236 437 ProSiteProfiles Zinc finger Dof-type profile. 100 154 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr1g02236 Accr-Chr1 56969540 56971905 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr1g02236 4 435 C2C2-Dof Transcription Factor Family AT5G39660 34.127 1.18e-64 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Accr1g02236 zf-Dof 6.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr1g02236 - - ccaj:109811729 460.685