Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr11g01379 ATGTTGGGTAACTGTGAGAAAATGGTACTCATCCCTCAAAACACTAAAGAATGGTCACACCCACAGAGGCAGGAACATGAGATAGATGATCAAAAGGTTTCGACGGCTTCTTCTTCTTCTTCTTCCTCTGCAGCTCAAAGGGTTATGGAAAAACCAAACCAAGAGCTTCTTCAACAGCAACAAGAAACTCTAAAGTGTCCTCGATGTGATTCATCAAACACAAAGTTCTGTTACTACAATAATTACAGCTTGTCTCAGCCTAGACACTTCTGCAAAGCCTGCAAACGATACTGGACTCGAGGAGGTACCTTAAGGAATGTTCCTGTTGGTGGAGGTTGCAGAAAAAACAAGCGTACTCTCAAGCGTCCAAATTCATCAGCTTCATCAGAAATTCACAATAATATTAGTACTACGCCTTCTTCTAATTCTTCTTCTTATACTGCCTCAGCTGTTTCAATTTCAAACCCTCCTTCACAATCTCATCAGATCGATATTGCTTCCACCTCCAATCACATCAGTCCTTTATTTTATGGCATGAATCTTCCGTTTCCAAGGTTCAATTCCACTTCTGTGTTTGATCATCATCATAATTCCCTTGGATTGGATTTCATTGATAATATTGCTGGTTACCGTAATGGGTTTTCTTCAAATCACACACTTGTTTCAAGTTATACTTCTTCTATCTTTGCTAGTTCCTCTTCTTCTTCTTCAACATCAGTAACCACATCCAGTACTGTTCCTCCTCCTCCTATCATGCCTTCACTGTTAAGCTCTACAAATCTGCAGCAACAAAAGTTCATCAATAATGGTGGGGCTACCAATAACAGTACCTTTCATGGGTTCATCAATAATAGCAATAACAGTACGAGTACTGAGGCTGAGATGCTTGCTTTAAAAGAGGTGAAATCTGTGGTGGTGGGGGAAGATGATGACAGTAACAGGTTTCTGGGTTGGCAAAATAACCACCAGATCGAGCATCATCAAGCAGGAGCTTTGATTATGTCTGATCCTACTTCATCACTTTACTGGAACACTACTACTGCAACAGCTATGGGTACTACTAATACTTGGAATGATCAAACCAATATTGGTCCTCATCAGTCCCTTCTCTCATCATCTGATCTACAATAA 1131 0.4032 MLGNCEKMVLIPQNTKEWSHPQRQEHEIDDQKVSTASSSSSSSAAQRVMEKPNQELLQQQQETLKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRTLKRPNSSASSEIHNNISTTPSSNSSSYTASAVSISNPPSQSHQIDIASTSNHISPLFYGMNLPFPRFNSTSVFDHHHNSLGLDFIDNIAGYRNGFSSNHTLVSSYTSSIFASSSSSSSTSVTTSSTVPPPPIMPSLLSSTNLQQQKFINNGGATNNSTFHGFINNSNNSTSTEAEMLALKEVKSVVVGEDDDSNRFLGWQNNHQIEHHQAGALIMSDPTSSLYWNTTTATAMGTTNTWNDQTNIGPHQSLLSSSDLQ 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr11g01379 376 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 43 264 IPR045174 GO:0003700|GO:0006355
Accr11g01379 376 MobiDBLite consensus disorder prediction 13 49 - -
Accr11g01379 376 MobiDBLite consensus disorder prediction 33 49 - -
Accr11g01379 376 MobiDBLite consensus disorder prediction 114 162 - -
Accr11g01379 376 MobiDBLite consensus disorder prediction 356 376 - -
Accr11g01379 376 ProSitePatterns Zinc finger Dof-type signature. 66 102 IPR003851 GO:0003677|GO:0006355
Accr11g01379 376 ProSiteProfiles Zinc finger Dof-type profile. 64 118 IPR003851 GO:0003677|GO:0006355
Accr11g01379 376 MobiDBLite consensus disorder prediction 122 162 - -
Accr11g01379 376 Pfam Dof domain, zinc finger 62 118 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr11g01379 Accr-Chr11 34557181 34558536 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr11g01379 64 179 C2C2-Dof Transcription Factor Family AT1G28310 59.483 1.90e-36 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Accr11g01379 zf-Dof 3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr11g01379 - - pcin:129285070 377.096