Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01449 ATGATGTCACAGGAAAATAATTCTCCTTCAAAGCAGGCTGCAGCTGCGAAAGAAGACGGTAGCCAGAGCTCCGACGGTGGCGGCGGGAGGAAAAAGGCCTCCGCGAGGCCACCAGAACAAGGTCTCAAGTGTCCAAGGTGTGACTCGCCCAACACCAAATTCTGTTACTACAACAATTACAGCCTGACGCAGCCAAGGCATTTCTGCAAGACTTGCCGGAGGTACTGGACCAAGGGCGGAGCTTTACGCAACGTTCCGATTGGCGGCGGTTGCCGGAAGAACAAGAAGGTCAAGTCATCGTCTTCACGGCTTCCCGGCGACCCCAAGGACCCCGGATTCCCGGGGGAGCTCGGCGGCTTCAAGTTCTTCCACAGCCTTTCACCGTCACTGGATTTTCATCTTGGTGGGTCCCTACCATTCCCTAAACTTAACCATCTTCCACCTCCAACCACATATAACACAGTCTCTTCCTTTGGGGATGTTCAAGCAGCCACCTTTGATCCATCTGGAAGCTCAAATTCTATGATAAATTTCAATTACCCAGGAGGAGGATTCAGCAGTGTAATTCAGGGTATGAGTTCTATGAACGTGAACAGCAACCTCGCTTCTTCAATTGAATCCTTGAGTTCTGTTAATCAAGACTTGCACTGGAAGCTACAGCAACAGAGGCTAGCGATGCTGTTTGGCGGCGATGATAACGGCCAAATCCAGAAAGACGACGGTGTTTCAGCAGTTACTACTCATAATCTTGAGAGCCAAATCCAGAGACCACAACCCACTTTGTTTCAGAATCTTGAGATTTCAAAGGCCGAGATTAATTCCGTGGCTGCTGGTAATAATTCTAGAAAAGAAGGTACAATTAGTGGTGATACCCCCACAGAGTGGTTTTTTGGGAATTCGTTTGCTTCTTCTGTGACTCCTACGCCCACAAGTACCAGTAGTGGTGCGAATAATGGAGGCCATGATAATGCAACCACTAACTGGAGTTCTTTTCATGCTTGGGGTGACGTGCATCAGCAATATAATGCTTTGCCCTAG 1038 0.4884 MMSQENNSPSKQAAAAKEDGSQSSDGGGGRKKASARPPEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVKSSSSRLPGDPKDPGFPGELGGFKFFHSLSPSLDFHLGGSLPFPKLNHLPPPTTYNTVSSFGDVQAATFDPSGSSNSMINFNYPGGGFSSVIQGMSSMNVNSNLASSIESLSSVNQDLHWKLQQQRLAMLFGGDDNGQIQKDDGVSAVTTHNLESQIQRPQPTLFQNLEISKAEINSVAAGNNSRKEGTISGDTPTEWFFGNSFASSVTPTPTSTSSGANNGGHDNATTNWSSFHAWGDVHQQYNALP 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01449 345 Pfam Dof domain, zinc finger 40 96 IPR003851 GO:0003677|GO:0006355
Accr10g01449 345 ProSitePatterns Zinc finger Dof-type signature. 44 80 IPR003851 GO:0003677|GO:0006355
Accr10g01449 345 ProSiteProfiles Zinc finger Dof-type profile. 42 96 IPR003851 GO:0003677|GO:0006355
Accr10g01449 345 MobiDBLite consensus disorder prediction 1 44 - -
Accr10g01449 345 MobiDBLite consensus disorder prediction 92 112 - -
Accr10g01449 345 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 23 223 IPR045174 GO:0003700|GO:0006355
Accr10g01449 345 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01449 Accr-Chr10 37874005 37875042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01449 39 345 C2C2-Dof Transcription Factor Family AT5G65590 42.249 6.75e-62 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Accr10g01449 zf-Dof 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01449 - - cave:132171487 382.874