Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Accr10g01142 ATGTCGGAGCTTAAAGACCCGGCGTTTAAGCTTTTTGGACGGACGATTTCTCTCAACCTCAACCGCCATGCTCCGTCCTCCAATGATTCCTCTGGTGATCACACTCCTCCTTCCTCTTCCTCTTCCCCACGCGAAGTCAGTTCTTCAACACACCATCACCACCCTCTGGAATTGTCAAGGAATGAACTCACCTCAGTACAAGATGATGATGCCTCCTATCAAAGCACAGAGGATTTAAAATCTCCCTCAGCATCTTCAGAAATTTTTGAGAATCCTAAGACTCCCTCAGCAGAAAGAGAGACTTCTCTGCTCAAATCTACTAAACATGGAGAACAAAGTGAGACAAGCAATTCAGAAGAAAAATCTCCGAAAAAACCTGACAAGATACTTGCATGCCCAAGATGCAGTAGCATGGACACCAAATTCTGTTATTTTAACAATTACAATGTGAGCCAGCCCCGTCATTTCTGTAAGAACTGTCAGAGATACTGGACCGCTGGAGGAACCATGAGAAATGTGCCTGTAGGCGCAGGTCGTCGCAAGAACAAAAACTCTTCAGCCTCACAGTATCGTCAAATAATGATTCCAAAGACCCTTCAGATTGCCAAGGAAAACTCTGCCAATGGATTCAACAATGCCGTTTTAGGAAATAGAGCAGCAGTTTTGACCTTTGGATCAGGTTCTCCTCTGTGTGATTCCATGGTTTCTGTGTTAAACCTTGCAGAGAAAACACAGAATGGTACTGTTCTAAACGAGTTTCAATTACCCGAGCAAAATAATTGTGTCTCTCATGGTAGAGAAGTTAATGGGAATGATCATCACCCCATTGCAGCTTCAGCTTCTTCAGAGAGGAAAATCAACACTGCCTCACAAGAACCTGTAAATAACATCAATCATGGTTTCCCTCCTCAATTGCCATGCTTCCCAGGTTCTTTATTGCCTTATCAATGGAACTCAGCGCAGTGGAATCCTCTGGTCCCTCCTCCTGGATTCTGTCCTCAAGGCTATCCGGCATCGTTCTATCCCAATCCTATATACTGGGGCTGTACTATACCACCTTCATGGAACATACCTTCCATATCTGCACAATCACCTTCTCTTAGCCAATCATCCCCTAGCTCTGGCCCTAATTCACCTTACCTAGGAAAACACTCGAGGGAAGGAAACATTATAAATCAAGTCAACTCGCCGAAAGAAAATCCTAATATGGAGAGTGGCAGTTCAGAAAGTGGTGTCTTGATTCCCAAGACTCTACGAGTTGATGATCCCAATGAAGCTGCAAAGAGTTCAATATGGTCAGCATTAGGGATGAAGAATGAGAAGACTAGTTCTCTGAATGGAGGAGGCCTTTTCAAGGCATTTCCTGCAAAGAGGGATGACAAGAACCATTTGGTTGAACCATCACTGGTGTTGCAGGCCAACCCGGCAGCTTTATCACGATCTCTTACTTTCCATGAGCAGATTTAA 1467 0.4431 MSELKDPAFKLFGRTISLNLNRHAPSSNDSSGDHTPPSSSSSPREVSSSTHHHHPLELSRNELTSVQDDDASYQSTEDLKSPSASSEIFENPKTPSAERETSLLKSTKHGEQSETSNSEEKSPKKPDKILACPRCSSMDTKFCYFNNYNVSQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSSASQYRQIMIPKTLQIAKENSANGFNNAVLGNRAAVLTFGSGSPLCDSMVSVLNLAEKTQNGTVLNEFQLPEQNNCVSHGREVNGNDHHPIAASASSERKINTASQEPVNNINHGFPPQLPCFPGSLLPYQWNSAQWNPLVPPPGFCPQGYPASFYPNPIYWGCTIPPSWNIPSISAQSPSLSQSSPSSGPNSPYLGKHSREGNIINQVNSPKENPNMESGSSESGVLIPKTLRVDDPNEAAKSSIWSALGMKNEKTSSLNGGGLFKAFPAKRDDKNHLVEPSLVLQANPAALSRSLTFHEQI 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Accr10g01142 488 PANTHER CYCLIC DOF FACTOR 2 1 487 IPR045174 GO:0003700|GO:0006355
Accr10g01142 488 MobiDBLite consensus disorder prediction 388 412 - -
Accr10g01142 488 ProSitePatterns Zinc finger Dof-type signature. 132 168 IPR003851 GO:0003677|GO:0006355
Accr10g01142 488 MobiDBLite consensus disorder prediction 362 412 - -
Accr10g01142 488 MobiDBLite consensus disorder prediction 362 380 - -
Accr10g01142 488 MobiDBLite consensus disorder prediction 20 128 - -
Accr10g01142 488 ProSiteProfiles Zinc finger Dof-type profile. 130 184 IPR003851 GO:0003677|GO:0006355
Accr10g01142 488 MobiDBLite consensus disorder prediction 102 128 - -
Accr10g01142 488 Pfam Dof domain, zinc finger 128 184 IPR003851 GO:0003677|GO:0006355
Accr10g01142 488 MobiDBLite consensus disorder prediction 20 46 - -
Accr10g01142 488 MobiDBLite consensus disorder prediction 60 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Accr10g01142 Accr-Chr10 33448663 33451638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Accr10g01142 4 486 C2C2-Dof Transcription Factor Family AT5G39660 39.453 1.82e-80 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Accr10g01142 zf-Dof 4.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Accr10g01142 - - qsu:112006803 533.102