Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g2017 ATGCCATCAAACTCCGGCGACAATCCCCGACCATCCAAGTCTCAAGCTCCGCCGCCGGAACAAGAGCACCTCCCATGTCCTCGCTGTGACTCCACTAACACCAAGTTCTGTTACTACAACAACTATAACTTCTCCCAGCCCCGCCATTTCTGCAAGTCTTGCCGGCGCTACTGGACCCACGGCGGCACCCTCCGTGACATCCCCGTCGGCGGTGGCAGTCGCAAGAATGCGAAACGCTCGCGCACTGCCTCTACGGTTTCTTCCTCTGTTCCGGTGACTTCCTCTGTTTCTACTCAGGATCAACATCCTCTTCATACTACCCCTGTTTTTGTACCCATCTCCGCCGGCCAAGGTGGCTCCTTGCCGTTCGCCGGTAACGGCGGAGTTGAGAGTGACTTGAAATCTAGTGTGGGAATGTGTGGAAGCTTCACTTCTTTGCTTAACAACACCAACCAAGGACCCGGGTTTCTGGCCCTAGGCGGGTTTGGGCTAGGACTTGGTCACGGGTTTGAAGATATGGGTTTTGGGAATGGAAGAGGTGGTAGCTGGACTTTTCCCGGGATGGTGGATGGCGCTGGCAACATCAACGGCGGAGTTGGGGCTGCGTCCGGCGTCGGGAATTCATGGCATCTTGAAGGCGGTGAAGGTGGTGGTTTTGTTAGTGGTGGTGCAGATTGCTTCTCTTGGCCAGGACTTGCAATTTCAACACCTGGAAGTGGTCTGAAATGA 729 0.5514 MPSNSGDNPRPSKSQAPPPEQEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGSRKNAKRSRTASTVSSSVPVTSSVSTQDQHPLHTTPVFVPISAGQGGSLPFAGNGGVESDLKSSVGMCGSFTSLLNNTNQGPGFLALGGFGLGLGHGFEDMGFGNGRGGSWTFPGMVDGAGNINGGVGAASGVGNSWHLEGGEGGGFVSGGADCFSWPGLAISTPGSGLK 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g2017 242 MobiDBLite consensus disorder prediction 1 26 - -
Acco12g2017 242 ProSitePatterns Zinc finger Dof-type signature. 26 62 IPR003851 GO:0003677|GO:0006355
Acco12g2017 242 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 12 150 IPR045174 GO:0003700|GO:0006355
Acco12g2017 242 MobiDBLite consensus disorder prediction 65 104 - -
Acco12g2017 242 ProSiteProfiles Zinc finger Dof-type profile. 24 78 IPR003851 GO:0003677|GO:0006355
Acco12g2017 242 Pfam Dof domain, zinc finger 22 78 IPR003851 GO:0003677|GO:0006355
Acco12g2017 242 MobiDBLite consensus disorder prediction 77 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g2017 Acco-ChrAcco12 31699022 31699750 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g2017 20 242 C2C2-Dof Transcription Factor Family AT3G50410 54.008 2.80e-56 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Acco12g2017 zf-Dof 3.3e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco12g2017 12 31699022 31699750 Acco12g2017 12 31699022 31699750 ECH