Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0890 ATGTCGGAGTTTAAAGACCCGGCGATTAAGCTTTTTGGACGGAGGATTTCTCTCACCCTCAACCCCCATGCTCCGTCCTTCAATGATTCCTTTGATGATCACACTCCTCCTTCCTCTTACTCTTCCCCACGCGAAGTCAGTTCTTCAACACACCATCACCACCCTCTGGAATTGTCAATGAATGAACTCACCTCAGTACAAGATGATGATGCCTCCTATCAAAGCACAGAGGATTTAAAATCTCCCTCAGCATCTTCAGGAATTTTTGAGAATCCTAAGACTCCCTCAGCAGAAAGAGAGACTTCTCTGCTCAAATCTGCCAAACACGGAGAACAAAGTGAGACAAGCAATTCAGAAGAAAAAACTCTGAAAAAACCGGACAAGATACTTGCATGCCCAAGATGCAATAGCATGGACACCAAATTCTGTTATTTTAACAATTACAACGTCAGCCAGCCCCGTCATTTCTGTAAGAACTGTCAGAGATACTGGACCGCTGGAGGAACCATGAGAAATGTGCCTGTTGGCGCAGGTCGTCGCAAGAACAAAAACTCTTCAGCCTCACAGTATCGTCAAATAATGATTCCAAAGACCTTTCCAATTGCCAAGGAAAACTCTGCCAATGGATTGCATAATGCTGTTTTAGGAAATAGAGCAGCTGTTTTGACCTTTGGATCAGGTTCTCCTCTTTGTGATTCCATGGTTTCTGTGTTAAACCTTGCAGAGAAAACACAGAATGGAACTGTTCTAAACGAGTTTCATTTACCTGAGCAAAATAATTTTGTCTCTCGTGGTAGAGTAGTTAATGGGAATGATCATCACTCTATTGCAGCTTCAACTTCTTCAGAGAGGAAAATCAACACTGCTTCACAAGAACCTGTAAATAACATCAATCATGGTTTGCCTTCTCAATTGCCATGCTTCCCAGGCTCCTCATGGCCTTATCAATGGAACTCACCACAGTGGAATTCTCCGGTCCCTCCTCCCGGATTCTGTCCTCAAGGCTATCCAGCATCGTTCTATCCCAATCCTATATATTGGGGCTGTACTTTACCACCTTCATGGAACATACCTTCCATATCTGCACAATCATCTTCTCTTAGCCAATCAGCCCCTAGCTCTGGCCCTAATTCACCTTACCTAGGAAAACACTCAAGGGAAGGAAACCTTATAAATCAAGTCAACTCGCCAAAAGAAAATCCGAATATGGAGAGTGGCAGTTCAGAAAGTGGTGTCTTGATTCCCAAGACTCTACGAGTTGATGACCCCAATGAAGCAATAAAGAGTTCAATATGGTCAGCATTAGGGATGAAGAATGAGAAGACCAGTTCTCTGAATGGAGGAGGCCTTTTCAAGGCATTTCCTGCAAAGAGGGATGACAAGAACCATGTGGTTGAACCATCACTGGTGTTGCAAGCCAACCCGGCAGCATTATCGCGATCTCTTACTTTCCATGAGCAGAGTTAA 1467 0.439 MSEFKDPAIKLFGRRISLTLNPHAPSFNDSFDDHTPPSSYSSPREVSSSTHHHHPLELSMNELTSVQDDDASYQSTEDLKSPSASSGIFENPKTPSAERETSLLKSAKHGEQSETSNSEEKTLKKPDKILACPRCNSMDTKFCYFNNYNVSQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSSASQYRQIMIPKTFPIAKENSANGLHNAVLGNRAAVLTFGSGSPLCDSMVSVLNLAEKTQNGTVLNEFHLPEQNNFVSRGRVVNGNDHHSIAASTSSERKINTASQEPVNNINHGLPSQLPCFPGSSWPYQWNSPQWNSPVPPPGFCPQGYPASFYPNPIYWGCTLPPSWNIPSISAQSSSLSQSAPSSGPNSPYLGKHSREGNLINQVNSPKENPNMESGSSESGVLIPKTLRVDDPNEAIKSSIWSALGMKNEKTSSLNGGGLFKAFPAKRDDKNHVVEPSLVLQANPAALSRSLTFHEQS 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0890 488 ProSiteProfiles Zinc finger Dof-type profile. 130 184 IPR003851 GO:0003677|GO:0006355
Acco12g0890 488 Pfam Dof domain, zinc finger 128 184 IPR003851 GO:0003677|GO:0006355
Acco12g0890 488 ProSitePatterns Zinc finger Dof-type signature. 132 168 IPR003851 GO:0003677|GO:0006355
Acco12g0890 488 MobiDBLite consensus disorder prediction 22 46 - -
Acco12g0890 488 MobiDBLite consensus disorder prediction 388 412 - -
Acco12g0890 488 MobiDBLite consensus disorder prediction 365 416 - -
Acco12g0890 488 MobiDBLite consensus disorder prediction 365 380 - -
Acco12g0890 488 MobiDBLite consensus disorder prediction 102 123 - -
Acco12g0890 488 MobiDBLite consensus disorder prediction 22 123 - -
Acco12g0890 488 PANTHER CYCLIC DOF FACTOR 2 2 488 IPR045174 GO:0003700|GO:0006355
Acco12g0890 488 MobiDBLite consensus disorder prediction 60 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0890 Acco-ChrAcco12 8873162 8876108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0890 83 488 C2C2-Dof Transcription Factor Family AT5G39660 43.095 1.40e-83 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Acco12g0890 zf-Dof 2.8e-32 No_clan