Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco12g0560 ATGTCACAAGAAAATAATTCTCCTTCAAAGCAGGCTGCAGCTGCGAAAGAAGACGGTAGCCAGAGCTCCGGCGGCGGTGGAGGGCAGAAAAAGGCCTCCGCGAGGCCACCAGAACAAGGTCTCAAGTGTCCAAGGTGTGACTCACCCAACACCAAATTCTGTTACTACAACAATTACAGCCTGACGCAGCCAAGGCATTTCTGCAAGACTTGTCGGAGGTACTGGACCAAGGGCGGAGCTTTACGCAACGTTCCGATAGGTGGCGGCTGCCGGAAGAACAAGAAGGTTAAGTCATCGTCTTCACGGCTTCCCGGCGACCCCAAGGATCCCGGATTCCCGGGGGAGCTCGGCGGCTTCAAGTTCTTCCACAGCCTTTCACCGTCACTGGATTTTCATCTTGGTGGGTCCCTACCATTCCCTAAACTTAACCATCTTCCACCTCCAACTACATATAACACAGTCTCTTCCTTTGCGGATGTTCAAGCAGCCACCTTTGATCCATCTGGAAGCTCAAATTCTATGATTAATTTCAATTACCCAGGAGGAGGATTCAGCAGTGTAATTCAGGGTATGAGTTCTATGAACGTGAACAGCAACCTCGCTTCTTCAATTGAATCTTTGAGTTCTGTTAATCAAGACTTGCACTGGAAGCTACAGCAACAGAGGCTAGCGATGCTGTTTGGCGGCGATGATAACGGCCAAATCCAGAAAAACGACGGTGTTTCAGCGGTTACTACTCATCATCTTGAGAACCAGATCCCGAGACCACAACCCACTTTGTTTCAGAATCTTGAGATTTCAAAGGCTGAGATTAATTCCGTGGCTGCTGGTAATAATTCCAGAAAAGAAGGCACAACTAGTGGTGATACCCCTACAGAGTGGTTTTTTGGGAATTCGTTTGCTTCTTCTGTGACTCCTACGCCCACAAGTACCAGTAGTGGTGCGAATAATGGAGGCCATGATAATGCAGCCAATAACTGGAGTTCTTTTCATGCTTGGGGTGATGTGCAGCAGCAATATAATGCTTTGCCCTAG 1035 0.485 MSQENNSPSKQAAAAKEDGSQSSGGGGGQKKASARPPEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVKSSSSRLPGDPKDPGFPGELGGFKFFHSLSPSLDFHLGGSLPFPKLNHLPPPTTYNTVSSFADVQAATFDPSGSSNSMINFNYPGGGFSSVIQGMSSMNVNSNLASSIESLSSVNQDLHWKLQQQRLAMLFGGDDNGQIQKNDGVSAVTTHHLENQIPRPQPTLFQNLEISKAEINSVAAGNNSRKEGTTSGDTPTEWFFGNSFASSVTPTPTSTSSGANNGGHDNAANNWSSFHAWGDVQQQYNALP 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco12g0560 344 ProSiteProfiles Zinc finger Dof-type profile. 41 95 IPR003851 GO:0003677|GO:0006355
Acco12g0560 344 Pfam Dof domain, zinc finger 39 95 IPR003851 GO:0003677|GO:0006355
Acco12g0560 344 ProSitePatterns Zinc finger Dof-type signature. 43 79 IPR003851 GO:0003677|GO:0006355
Acco12g0560 344 MobiDBLite consensus disorder prediction 91 111 - -
Acco12g0560 344 MobiDBLite consensus disorder prediction 1 43 - -
Acco12g0560 344 MobiDBLite consensus disorder prediction 275 323 - -
Acco12g0560 344 MobiDBLite consensus disorder prediction 1 28 - -
Acco12g0560 344 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 22 225 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco12g0560 Acco-ChrAcco12 5047258 5048292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco12g0560 38 344 C2C2-Dof Transcription Factor Family AT5G65590 42.154 6.41e-62 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Acco12g0560 zf-Dof 1.3e-32 No_clan