Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g2183 ATGGCTCCAAACACTTCAATTTCGGGCATTCAATTTATAATAGTCATAGAAACACACGGCGCTATTTGGTTGCAAATGTTTTGGATTGTTGTTAGATCCACACAGATCATAAAGAAGATGATCCAGGAACTGTTGAGCGGTGCTGGTCTCATTTCAGGCGAAAGCAAAATCTCCAATAATGCACCAGCCGGAGTTTTAGCACCTCTCATCACTACACCTTATAGTTCTGTTCCTTCTTCTTCTCCGTCATCTCACCCTTCCACCACCACCACTACTTCTGCTGCCGCCACCGCTGCAGCCGCAAATTCTGAGAACCAGAATCTGAGGTGCCCGCGGTGTGATTCTTCCAACACAAAGTTCTGTTACTACAACAACTACAACCTCACTCAGCCTCGCCACTTCTGCAAGACGTGTCGCCGGTACTGGACCAAAGGTGGCGCTCTCAGGAATGTTCCGATCGGCGGTGGCTGCCGGAAGAACAGGAACGTTGGCGCCGCCTCCAACTCTATCGTGAAGACGAGTGTGGCTAAGATGAAAACAGCTGCCCCATCGGAGCTCGAGAGGTCGGTGCTTGGCGTGGCCGCCGGGTTCATCGACCAACACGACCTTTCTCCAAACCCGATCCTATGGGGCTCCCCGCAAAGTAGTCCTCACGTGTTAGCTCTGCTAAGAACTGGTCAAAACCATAACCCTAACCCTAACCCTAGTCCCATATCCGTCAATGCTGTTAATAAGGAAGAAGGGAATAACTTGATGGGGTCCCACACGGTGACTGAGGCAGCGGTTGGAAATGGGTTGATTCATGGGCGAGCCCTAAACTTTGATTCTGTTGGTCAATTTCCAACACTTGGGCTATGCAGCTCTATCTGGAGAAGCAGTAGTAATAGTAGTAGTAGTAATAATAATAATCAAGATGGGTTTGTAGTTGGAGAACATGGAATTCAAGAACTGTACCAGAGGCTGAGATCATCATCATCGCAAGCAGCTAATTATTTTGGCGATAATAACAACTCGTCGCAGGTGTTAGGAAACATGGCTTCTTCTTCTTCACATGCGTCTTCTTTATCAACTAATTTGGGGTCAGGTTCAGTGGTTTCTGGGGATAATCAATTGGGGTACACCTGGAACCCAACACTTTCGTGGTTTGATCTTTCCACCACCAATAATGGCACTTTATATCCTTAA 1185 0.4759 MAPNTSISGIQFIIVIETHGAIWLQMFWIVVRSTQIIKKMIQELLSGAGLISGESKISNNAPAGVLAPLITTPYSSVPSSSPSSHPSTTTTTSAAATAAAANSENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNRNVGAASNSIVKTSVAKMKTAAPSELERSVLGVAAGFIDQHDLSPNPILWGSPQSSPHVLALLRTGQNHNPNPNPSPISVNAVNKEEGNNLMGSHTVTEAAVGNGLIHGRALNFDSVGQFPTLGLCSSIWRSSSNSSSSNNNNQDGFVVGEHGIQELYQRLRSSSSQAANYFGDNNNSSQVLGNMASSSSHASSLSTNLGSGSVVSGDNQLGYTWNPTLSWFDLSTTNNGTLYP 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g2183 394 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 98 319 IPR045174 GO:0003700|GO:0006355
Acco11g2183 394 MobiDBLite consensus disorder prediction 77 100 - -
Acco11g2183 394 Pfam Dof domain, zinc finger 106 162 IPR003851 GO:0003677|GO:0006355
Acco11g2183 394 ProSitePatterns Zinc finger Dof-type signature. 110 146 IPR003851 GO:0003677|GO:0006355
Acco11g2183 394 ProSiteProfiles Zinc finger Dof-type profile. 108 162 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g2183 Acco-ChrAcco11 35640611 35642793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g2183 104 217 C2C2-Dof Transcription Factor Family AT1G51700 50.420 8.53e-35 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Acco11g2183 zf-Dof 1.2e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco11g2183 11 35640611 35642793 Acco11g2183 11 35640611 35642793 ECH