Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco11g1187 ATGTCGGCTGCAGCGACGTCCAAAGACGAGAACCAGGGCTCAGGCGGCGGCCGGAAAAGCACCTCATCGGGGGTGGCGGGGAGGCAGTTAGAGCAAGGGATAAAGTGCCCGAGATGTGACTCACCCAACACTAAATTCTGCTACTACAATAATTACAGCCTGAGTCAGCCGAGGCATTTCTGCAAGACTTGTCGTAGATACTGGACAAAAGGTGGAGCCTTGCGTAACGTTCCGATTGGCGGCGGTTGCCGGAAGAACAAGAAACTGAAATCATCCTCCTCTTCATCAAGGTTCTCAAATGAAGGTAGTTTCTGCCCTTCTCTGGATTTTAACCTCGGTGGTGGAGCTGCCGGCTTCTTACCCTTCCCTAGGCTGAACGATCACCCTCCAGCTTTCAACCTCGAAGTAACAACCCCGAGTTCTTTCGATATCGGATTTAATTACCCACTTAACGGCGGTGTAATTCACGGCATGAGCTCATCAATGAACGTTCAGAGTAGCGTTGCTTCTCCGATTGAGTCTCTGAGCTCTATAAACCAAGACCTGCACTGGAAGCTGCAGCAGCAGAGATTAGCGATGCTATTTGGAGGGCATAGTACTACTGCTACTGTTACTGGTCTAACAGATAACCGAGCTGCCATTTCAGCGGTTAATCTCGAGAACCAGTGTCAGAAATCATCATCACCACACCCTATTTTGTTTCAGAATCTTGAGATTTCTTCGAAGCCGGCAGAGACGATCTGTCCGGTAGTCGTTGGAAATTCGAGGAGAGATACACCCACAGAGTGGTTCTTCGGGAGCCCGTACGCTTCGGTGACGCCGACGCCAACTACGGCAAGCGGCAGCGGTAATAATAATGGGAATGATAATGGAAGTAGTAGCTGGAGTCTTCAAGGTTGGGGTGATGTGCAGCAGCAATACAGTGCTTTGCCCTAG 936 0.5032 MSAAATSKDENQGSGGGRKSTSSGVAGRQLEQGIKCPRCDSPNTKFCYYNNYSLSQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKLKSSSSSSRFSNEGSFCPSLDFNLGGGAAGFLPFPRLNDHPPAFNLEVTTPSSFDIGFNYPLNGGVIHGMSSSMNVQSSVASPIESLSSINQDLHWKLQQQRLAMLFGGHSTTATVTGLTDNRAAISAVNLENQCQKSSSPHPILFQNLEISSKPAETICPVVVGNSRRDTPTEWFFGSPYASVTPTPTTASGSGNNNGNDNGSSSWSLQGWGDVQQQYSALP 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco11g1187 311 ProSitePatterns Zinc finger Dof-type signature. 36 72 IPR003851 GO:0003677|GO:0006355
Acco11g1187 311 ProSiteProfiles Zinc finger Dof-type profile. 34 88 IPR003851 GO:0003677|GO:0006355
Acco11g1187 311 Pfam Dof domain, zinc finger 33 88 IPR003851 GO:0003677|GO:0006355
Acco11g1187 311 MobiDBLite consensus disorder prediction 267 301 - -
Acco11g1187 311 MobiDBLite consensus disorder prediction 1 27 - -
Acco11g1187 311 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 23 160 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco11g1187 Acco-ChrAcco11 25292029 25292964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco11g1187 13 311 C2C2-Dof Transcription Factor Family AT5G65590 38.576 4.35e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Acco11g1187 zf-Dof 6.1e-33 No_clan