Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco10g2396 ATGCCGAATAAAAAATCCACCCTGCAAAGCACTACCCTCTTGTTACTTTTGCAGGTTTTGAATTTGATCAATGTCGCTCATGTGACTTGCAAATCTACGATCGAGCCCTGCTCCAACTCTGACTCCTGCAATGCCCTGCTCGGATATACTCTCTACACTGACCTAAAGGTCTCTGAGGTAGCCTCCCTCTTTCAAATCGACCCCATTGCTCTTCTCACTTCCAATGCCATTGACATTTCTTATCCCGACGTGGAGCACCACATCCTTCCCTCTCGCCTCTTCCTCAAAATCCCTATTACTTGTTCGTGTGTTGATGGAATTCGCAAATCAGTATCGACCCACTACAAAAGTCGGCCCTCTGATACCCTCTCTTCGATTGCGGTTTCGATATATGGGGGTCTGGTGTCTGCTGACCAGCTTAGGGAAGCCAATTCGATAAGTGACCCTTCAGTACTGGATGTGGGTCAGAATCTTGTCGTGCCGCTTCCATGCACTTGCTTCAATAGTACCGATAACTCTTTGCCTGCAATCTATCTGTCGTATGTGGTCCAGCCAATCGATACTTTGGCTGCAATTGCCGCGAGGTATTTCACTACTCTGACTGATTTGATGAACGTCAATGCCCTGGGAAGTTCAGCTATCGACGATGGCGATATTCTCGCTATACCGATACCTGCTTGCGCATCAAATTTCCCAAAATATGCCGCTGATCATGGTTTGATTGTCCCTAACGGAAGCTATGCTATCACAGCGGGCCACTGTGTGCTATGTAGCTGCGGGCCACGAGATTTAAATTTATACTGTATGCCTGCTTCTCTGGCTGTTTCTTGTTCCAGCATGCAATGTAAAAGAAGCAATCTCATGCTCGGAAATGTTACAGTGCAACAGGGTGGTGGTGGTTGTAGTGTTAATTCTTGTAATTATGACGGTTTTGCTAATGGCACCATATTAACAGCATTGTCTACATCTCTTCAACCTCGATGCCCAGGGCCGCAGCAATTTCCTCCACTCACAGCACCGCCAACTACTGTTCCGAAAGCGTCAATATTTGCACCAGCACCGTCACCTCTGTCAGATGGAGCTGGTCCTTTATCACCCAAATCATCAGTGGTGCCAGCGTCGGGGTCGTTTCCAGGGGTCCAACCTGCAAATGGCCCTATTAGCGGCCTTACTTCTGGTGCTTCCTGTGCTTGTTCTTTATTGAATCCTTTGCCTGCTTTGACATCTGCCCTTGTGTTTTCGCTTGTCAAGTTGATGATCTCTATGGTATTGTAA 1275 0.4737 MPNKKSTLQSTTLLLLLQVLNLINVAHVTCKSTIEPCSNSDSCNALLGYTLYTDLKVSEVASLFQIDPIALLTSNAIDISYPDVEHHILPSRLFLKIPITCSCVDGIRKSVSTHYKSRPSDTLSSIAVSIYGGLVSADQLREANSISDPSVLDVGQNLVVPLPCTCFNSTDNSLPAIYLSYVVQPIDTLAAIAARYFTTLTDLMNVNALGSSAIDDGDILAIPIPACASNFPKYAADHGLIVPNGSYAITAGHCVLCSCGPRDLNLYCMPASLAVSCSSMQCKRSNLMLGNVTVQQGGGGCSVNSCNYDGFANGTILTALSTSLQPRCPGPQQFPPLTAPPTTVPKASIFAPAPSPLSDGAGPLSPKSSVVPASGSFPGVQPANGPISGLTSGASCACSLLNPLPALTSALVFSLVKLMISMVL 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco10g2396 424 SUPERFAMILY LysM domain 179 224 IPR036779 -
Acco10g2396 424 Gene3D LysM domain 171 231 IPR036779 -
Acco10g2396 424 Gene3D LysM domain 110 170 IPR036779 -
Acco10g2396 424 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 13 332 - -
Acco10g2396 424 CDD LysM 180 222 IPR018392 -
Acco10g2396 424 ProSiteProfiles LysM domain profile. 113 160 IPR018392 -
Acco10g2396 424 ProSiteProfiles LysM domain profile. 179 222 IPR018392 -
Acco10g2396 424 CDD LysM 113 160 IPR018392 -
Acco10g2396 424 SMART LysM_2 180 223 IPR018392 -
Acco10g2396 424 SMART LysM_2 114 161 IPR018392 -
Acco10g2396 424 Pfam LysM domain 181 223 IPR018392 -
Acco10g2396 424 Pfam LysM domain 119 161 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco10g2396 Acco-ChrAcco10 35564956 35567068 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco10g2396 29 401 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 70.400 0.0 544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco10g2396 10 35564956 35567068 Acco10g2396 10 35564956 35567068 ECH