Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g2207 ATGGGTTTGAGTTCTAAGAAGGTTTCTAGTGGTGGGATTGGTTGGAACCAGAACTTGCTGCAAGATCAGAAGTTGGAGCTTCCAAAACCTCCATTGATGAGGAAACAGCAGCAACAACAGCAACAGATTCAGTCATCTCATCAGCAATCATCATCATTATCATCGGAGCCTTTGAAGTGTCCGAGGTGTGATTCGATCAATACCAAGTTCTGTTACTACAACAACTACAACAAGTCTCAGCCTCGCCATTTCTGCAGAACCTGCAAGAGGCACTGGACTAATGGTGGCACCTTGCGCAATGTCCCCGTCGGCGGCGGCCGGAAAAACAAACGCCTCAAGAAATCATCATCATCATCCACCCCCATCTCTTCCTCCGCCGCCGCCGCAACCTCTGGCATGGCAATTCAGAGTTCCCTGCAAAGGCCAAGTAATAATAATCTTCCTCCGCCTCCATCATCCTCCGCCTCTCTGTTTCAGTCTCTGGTTCCGTCACAACCGTTGACCTTGCTGCTTCCTGCTTCTCATCAGAATCTGATGAACCCCAGAGACTCACAACAACAAAGTAAAGATTTTGGAATTGGGAATTGTACTGGAAGTTTCCTGACTTCGACTCTGCCTCTTCTTGCTCATCAAAATCAGAGCTTTATCTTCCCTTTCTCATCAAGCTCCTCTGCCACTTTTGAGACTAACCCATCTTCTGTTTCAACCTCTCTGAGATCCTCAAGTGTTTACAACAACTTTAATAACTACAGCCAAGAGTTGAAGACAATGGAGGAGCCAACCCCAACACGGCCACAGACACAGACATGGGAGATACCTTCGACAAGCGTAGCAGGCAATACAGAAATGTCAAACTACTGGACTTGGGAGGACCTCGATTCGTTGGTCTCAACTGATCTCAATGTTCCCTGGGATGATTCTGATCTAAAACCCTGA 936 0.4722 MGLSSKKVSSGGIGWNQNLLQDQKLELPKPPLMRKQQQQQQQIQSSHQQSSSLSSEPLKCPRCDSINTKFCYYNNYNKSQPRHFCRTCKRHWTNGGTLRNVPVGGGRKNKRLKKSSSSSTPISSSAAAATSGMAIQSSLQRPSNNNLPPPPSSSASLFQSLVPSQPLTLLLPASHQNLMNPRDSQQQSKDFGIGNCTGSFLTSTLPLLAHQNQSFIFPFSSSSSATFETNPSSVSTSLRSSSVYNNFNNYSQELKTMEEPTPTRPQTQTWEIPSTSVAGNTEMSNYWTWEDLDSLVSTDLNVPWDDSDLKP 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g2207 311 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 37 239 IPR045174 GO:0003700|GO:0006355
Acco06g2207 311 MobiDBLite consensus disorder prediction 115 143 - -
Acco06g2207 311 ProSiteProfiles Zinc finger Dof-type profile. 58 112 IPR003851 GO:0003677|GO:0006355
Acco06g2207 311 ProSitePatterns Zinc finger Dof-type signature. 60 96 IPR003851 GO:0003677|GO:0006355
Acco06g2207 311 MobiDBLite consensus disorder prediction 256 275 - -
Acco06g2207 311 MobiDBLite consensus disorder prediction 33 58 - -
Acco06g2207 311 Pfam Dof domain, zinc finger 57 110 IPR003851 GO:0003677|GO:0006355
Acco06g2207 311 MobiDBLite consensus disorder prediction 96 158 - -
Acco06g2207 311 MobiDBLite consensus disorder prediction 19 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g2207 Acco-ChrAcco06 17087237 17088172 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g2207 34 131 C2C2-Dof Transcription Factor Family AT5G60850 54.082 2.22e-29 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Acco06g2207 zf-Dof 3e-31 No_clan