Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco06g1311 ATGAGCGGTCTTAGAGAAATGTCTCAAAAGGATCCGGCTATCAAGCTATTTGGCAAGAAGATTCCCTTACCGGAATGTCAGATTCCGGTGACCTCTCCAATGGCTACTCAGGTTCCGGCCAACTCCAGAACCATGGATGCTTGCAGTAGCTTGAAGAAAACAGAAGTGGAAAGAGATTGCGCAGAAAACTCAGAGCAACAAGAGAATGCCTCTGAGTCAGCGGCAAGTAAAGAAGGGTCCCCAGATAATCAGCTAGAAAATGAACCCAAAGCCAATCCCAAGACTATGGAAGATAGGGTGGAAACTAGCTGCACAGATCAAGATAAATCATTTAAGAAACCTGACAAGATTCTTCAGTGTCCACGATGCAACAGCTTGGACACAAAGTTTTGTTATTTCAATAACTACAATGTCAATCAGCCTCGACATTTCTGCAAGAACTGCCAAAGGTATTGGACTGCTGGTGGAACAATGAGGAATGTTCCGGTGGGCGCCGGGAGAAGAAAGAACAAGCACCTAGGCTCTCAGTTTCGCCACATCATAGTGTCATCTGATGGAATTTCAACCTCTAGGTTGGAAACCACAGACTCATCTAGTCACCAATTTATCTCATCTCCTGAATCTTCAGCTGCTTTCAGGTCTTCTTCATCAATGGCAATGGATAATAATGGTATTGTATTGAAATTTGGTCCAGATGCCCCTCCTCTCTGTGAAACCATGGAGACAATGCTTAATATTAGAGACCAGAAAAGGAAAGTTGATGCAGAAAATGGGAAAGAACAATCTTTATCTGGATCTTCAGTAGCAAATAGTAGTGGTACAGAACTTGTCATGCAAAAGGAGCAGTGTGTTTCTAATCAGCTTCGCGCATCAAATCAAATGCCATGTTACCCTGTTCCTCCACTATTGTTTCCCTGGAATCCAGATTGGAACAATGTTGTTTCTATGGCTGCAATTCATCAATCTTCGCCGCCAATTCAGTGGTATCCTTCACCGTTGGTGGCAGCTCCCGGCATGTGCCCACCTGGCATTCCTTTACAATTTGCACCACCGCCATATTGGTCTGCCGGCACCGGGACAATCTCAATAGGATCTAATGGTTGCCTTTCGCCATCATCGTCAACAAGTAATAGTTGCTGCTCAGGCAATGGCTCTCCAACTTTGGGAAAACATTCTAGAGATACAGTCTTGGCAGATGAAGAGAAGTCAGAGAAGTGTGTTCTGGTTCCCAAGACTCTTAGGATTGATGATCCAAATGAAGCTTCAAAAAGTCCTATATGGGCTACATTAGGCATAAAGCCTGATAAGGAGTCTGAATCAAAGAAATTGGAAGCTGAAGGAGATGGAAAAGACCGTGTGTTGGGTGTTTCTCAAATTTTAGATGCTATCCCAGCTGCTATTTCCAGGGCGCATGCATTCCAGGAGGGCATACAATGA 1437 0.4426 MSGLREMSQKDPAIKLFGKKIPLPECQIPVTSPMATQVPANSRTMDACSSLKKTEVERDCAENSEQQENASESAASKEGSPDNQLENEPKANPKTMEDRVETSCTDQDKSFKKPDKILQCPRCNSLDTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKHLGSQFRHIIVSSDGISTSRLETTDSSSHQFISSPESSAAFRSSSSMAMDNNGIVLKFGPDAPPLCETMETMLNIRDQKRKVDAENGKEQSLSGSSVANSSGTELVMQKEQCVSNQLRASNQMPCYPVPPLLFPWNPDWNNVVSMAAIHQSSPPIQWYPSPLVAAPGMCPPGIPLQFAPPPYWSAGTGTISIGSNGCLSPSSSTSNSCCSGNGSPTLGKHSRDTVLADEEKSEKCVLVPKTLRIDDPNEASKSPIWATLGIKPDKESESKKLEAEGDGKDRVLGVSQILDAIPAAISRAHAFQEGIQ 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco06g1311 478 ProSitePatterns Zinc finger Dof-type signature. 120 156 IPR003851 GO:0003677|GO:0006355
Acco06g1311 478 MobiDBLite consensus disorder prediction 56 111 - -
Acco06g1311 478 MobiDBLite consensus disorder prediction 66 90 - -
Acco06g1311 478 MobiDBLite consensus disorder prediction 250 271 - -
Acco06g1311 478 MobiDBLite consensus disorder prediction 91 111 - -
Acco06g1311 478 Pfam Dof domain, zinc finger 115 172 IPR003851 GO:0003677|GO:0006355
Acco06g1311 478 PANTHER CYCLIC DOF FACTOR 2 9 475 IPR045174 GO:0003700|GO:0006355
Acco06g1311 478 ProSiteProfiles Zinc finger Dof-type profile. 118 172 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco06g1311 Acco-ChrAcco06 9032784 9035189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco06g1311 11 475 C2C2-Dof Transcription Factor Family AT5G39660 35.057 5.02e-72 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Acco06g1311 zf-Dof 2.7e-32 No_clan