Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco05g1889 ATGTGTACGATGATGTCAGGTAGTTGTGAATTCTCGGCTGCGTCGTCTGATGCTAAGCCATTCCCCAGGTGGAAGCCCCACCATGTGGAGCCTCCTTCTCCTCCTTGCCCTCGCTGTTCTTCTTCCAACACCAAATTCTGTTACTACAACAACTACAGCTTATCCCAGCCCAGGTACTTGTGTAAATCTTGCCGTCGCTACTGGACCAAAGGCGGCTTTATCCGCAACGTCCCCGTCCGCGGTGGTTCCCGAAAATCTCGCCGTCCTAAGACCACCAGGCTCCAGCCAAGCCAGCGTGTTTCCACCAACCACGCTCCTACTAACTCCGACACCAACGGGTCTGATATTGACATGGCCGTGGTATTTGCTAATTACTTGAGCTCTGGTAACGATGCGACTCAGCCGTCCGATCCGGTGGTAGAGGGAGAGGGCATGGTTTTTCCTCGAGACGAGTCGTCGGTGATGAGTGGAATTGAGTTAGAGTGGGAGAGCTTGTTAGGAGGTGGTGACGGCGGAGAAGTGGTCCAAGATGATGTTTTCTGCTTGTCTGATGCTACGACGTCGTCTTCATCGTCTGTCATGTGGCAACCACCACCTCCACTGATGCAGTTGCCGGAGGAGTTGGACAATCCCTTGCCTTTCAATTATGATGAGGTTGCTCAATTTCCTACCGTCGCCGATTATACCTGGAATTGGAATTCCTTCGATTTTCCTACTTTGCAGGCCTTCTCATCATCAAGGCCTCTTGATCCTTAA 756 0.5185 MCTMMSGSCEFSAASSDAKPFPRWKPHHVEPPSPPCPRCSSSNTKFCYYNNYSLSQPRYLCKSCRRYWTKGGFIRNVPVRGGSRKSRRPKTTRLQPSQRVSTNHAPTNSDTNGSDIDMAVVFANYLSSGNDATQPSDPVVEGEGMVFPRDESSVMSGIELEWESLLGGGDGGEVVQDDVFCLSDATTSSSSSVMWQPPPPLMQLPEELDNPLPFNYDEVAQFPTVADYTWNWNSFDFPTLQAFSSSRPLDP 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco05g1889 251 ProSitePatterns Zinc finger Dof-type signature. 36 72 IPR003851 GO:0003677|GO:0006355
Acco05g1889 251 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 31 128 IPR045174 GO:0003700|GO:0006355
Acco05g1889 251 MobiDBLite consensus disorder prediction 93 114 - -
Acco05g1889 251 Pfam Dof domain, zinc finger 35 88 IPR003851 GO:0003677|GO:0006355
Acco05g1889 251 ProSiteProfiles Zinc finger Dof-type profile. 34 88 IPR003851 GO:0003677|GO:0006355
Acco05g1889 251 MobiDBLite consensus disorder prediction 78 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco05g1889 Acco-ChrAcco05 35305978 35306733 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco05g1889 33 127 C2C2-Dof Transcription Factor Family AT3G52440 60.000 5.68e-34 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Acco05g1889 zf-Dof 1.4e-29 No_clan