Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g3863 ATGGTTTTCCCTTCTATTCCAGTCTATTTAGATCCTCCCAATTGGCATCAGCAGCAACAAACTTATCATCATCAGACAAATGAGACGTGTGAGCCTCCAACACTGCTCCCGCAAGCCCCTCATATGGGCTCAATCAGGCCCGGATCGATGGCAGATCGAGCCCGGCTAGCGAAGATACCGCCGCCGGAGGCAGCTCTCAAGTGTCCTCGCTGTGAATCAACCAACACAAAATTCTGCTACTTCAACAACTACAGCCTGACTCAACCCAGGCACTTCTGCAAGACCTGTAGGCGTTACTGGACAAGAGGCGGCGCTCTCAGGAACGTTCCGGTTGGCGGAGGATGCCGCCGAAACAAGAAGAGCAGGAGAAGCCGATCCAAGTCGCCGGAAGCCTCTGACAGGCAGCCATCGTCCAACCCATCAGGCGGCGGGGCCGTCACCATAGCCGCCGAGCTGATTGGTCAAGTGCCGTGCCAAGCATCTAATATACCATTCATGGCGTCCTTACAGAATCTGAGTCGCTATGGAGTGGAAAGCATGGGCCTCAATTTGCAAGGACAGAGTGATCACATGTTTCCCATTGGGCTTAATGGAAGTAATATTTCAAGCGGAGGACTAGATCAGTGGCGGTTAAAGCAATTTCCTAATTTCTTGAATGGTTTCGATCAGTCAAGTTCAGCTGCTTCAAACCCATTTCATCAAAGCGAACTCGGCAGTTCTAGGGCTACGCAACTGCCTTCTGTGAAATCGGAAGAGAACGGAGCCCTGAATTTGTCTGGGTCGCAAGATCCGAGCATATCAGAAAATAACTACCAGTACTATTCATGGACTCCTACCACTGATATTATATCAGGCCTTGCCTCTTCTTCCACCACCCATGTCCTGTAA 888 0.5079 MVFPSIPVYLDPPNWHQQQQTYHHQTNETCEPPTLLPQAPHMGSIRPGSMADRARLAKIPPPEAALKCPRCESTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKSRRSRSKSPEASDRQPSSNPSGGGAVTIAAELIGQVPCQASNIPFMASLQNLSRYGVESMGLNLQGQSDHMFPIGLNGSNISSGGLDQWRLKQFPNFLNGFDQSSSAASNPFHQSELGSSRATQLPSVKSEENGALNLSGSQDPSISENNYQYYSWTPTTDIISGLASSSTTHVL 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g3863 295 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 39 235 IPR045174 GO:0003700|GO:0006355
Acco01g3863 295 ProSiteProfiles Zinc finger Dof-type profile. 66 120 IPR003851 GO:0003677|GO:0006355
Acco01g3863 295 Pfam Dof domain, zinc finger 65 120 IPR003851 GO:0003677|GO:0006355
Acco01g3863 295 ProSitePatterns Zinc finger Dof-type signature. 68 104 IPR003851 GO:0003677|GO:0006355
Acco01g3863 295 MobiDBLite consensus disorder prediction 228 263 - -
Acco01g3863 295 MobiDBLite consensus disorder prediction 110 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g3863 Acco-ChrAcco01 54305299 54306347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g3863 32 294 C2C2-Dof Transcription Factor Family AT3G55370 44.595 5.57e-58 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Acco01g3863 zf-Dof 2e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco01g3863 01 54305299 54306347 Acco08g0175 08 1159596 1160738 PCT