Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco01g2572 ATGTCGTCGTCTCCTCGTCTCCCCAGAAAGAATCTCCCTGGAAAAAGTAATGAATTGGATCGAAAGAAAGAAAAGGGCGATTCAAACCTCAAGCAATTTGATCTTTCATCGGCACATAGAGTCATGTCAACAGTGAGAGATCCTGCTATAAAGCTATTTGGTAGAGATATTCCTCTAGATTCAACACGCAACACCGATTCGCCTCAAGTTCTGAACAGGTATGATGAATCAACAATTGAAGGAAATCTTCCTTCCAGAGCTGGCAAGCAGCATAATCCTATTGAAGAAGCAGACAGAAACGTTTATAGAAGTCCTACTTCTGAAGTTGAAGCTAAAGTAGTTCATAGAACTAAGGACTGCAAGGCTGGTAATAAAGATATGGATCGTCAAGAAAAAGTTTTCAAGAAACCAGATAAGGTGCTGCCCTGTCCTCGCTGTAACAGCTTGGAGACTAAGTTTTGCTATTTCAATAATTACAATGTTAATCAACCTAGGCATTTCTGCAAAAACTGCCAAAGATATTGGACAGCGGGGGGGATAATTAGAAATGTTCCTGTGGGGGCCGGAAAGCGCAAAAATAAACATTCGCCATTACCTGTTGGCCAAGATATAGAATCTGTTGCCCACACAGACTCCAACTCTCTTCCTACAGCTTCAATGCCTGATGGAGGAATGGGAAATAGCCCTAGAATCAGTGAGGAAGCTCCTCTTTGTGAATCCTTGGAAACCGTGTTAAATCTAAAAGGCCAAAAAAAAACTGAAGTTGATTCCACTATTGGTAATGATAGTGAGGAGCCTTCCAGTGATTTTGAATCCAGGGAAAAGGAATGCTCAGAAAATGAAATTGAGCAGGTAGGTTTGCAGCAACACTTAAATGGTTTTAATCCTCTACATCCACTTCATTATTATCCTGTACCTCCCTGGGCATACCAATGGAATCCATGTTGGAATTCGATGGTATTTAGACCCAGTCCTGCTTATATGGGCTCTGCAACTATGATGGCGGTCCCAGGTTTCACTGCACCAACAATAGAATTATCGACAGCACCTTTTTATTCGAGTCCCATGCCAAGCTGGACTGGGCAGAAGGAAGAGTCTCCATTTGCTGGGTCTACATTTAGTGCTTGTTCAGGGACTAGGTCTCCAACATTGGGAAAACATTCAAGGGATGTAAGTACTCAGGCAGGTGATGCAATGAGACAGAATCTTTGGGTACCTAAGACTCTGAGAATTAATGACCCAGAAGAAGCTGCAAAGAGTTCTATATGGTCTGCTTTTGGTACAAAGATTGAACACAGCAAACCGATTATCAAAGGCAGTGTTTTTAAATCTTTTGAACCTAAGTCAGAAGGTGCAAGATCTCATACTTCAAATAGTGACCAAATTCTGAGTGCAAACCCTGCTGCTTTTTCTCGCTCAGAATCATTTCAGGAAAGAATGTTCGTAAGAATTTACGATCATGTGACTTTAATAGCTTTCACGTGTAAACCTCAGGGGCTACCTCAAAAAAAGAGCCGTCAGAGTCAAAATGTCCTTGTTACATGGGATTGCAACGATTTTGTTTTAGAGAACACATGCAAAACATCCAAGCCATATTAG 1599 0.4146 MSSSPRLPRKNLPGKSNELDRKKEKGDSNLKQFDLSSAHRVMSTVRDPAIKLFGRDIPLDSTRNTDSPQVLNRYDESTIEGNLPSRAGKQHNPIEEADRNVYRSPTSEVEAKVVHRTKDCKAGNKDMDRQEKVFKKPDKVLPCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGIIRNVPVGAGKRKNKHSPLPVGQDIESVAHTDSNSLPTASMPDGGMGNSPRISEEAPLCESLETVLNLKGQKKTEVDSTIGNDSEEPSSDFESREKECSENEIEQVGLQQHLNGFNPLHPLHYYPVPPWAYQWNPCWNSMVFRPSPAYMGSATMMAVPGFTAPTIELSTAPFYSSPMPSWTGQKEESPFAGSTFSACSGTRSPTLGKHSRDVSTQAGDAMRQNLWVPKTLRINDPEEAAKSSIWSAFGTKIEHSKPIIKGSVFKSFEPKSEGARSHTSNSDQILSANPAAFSRSESFQERMFVRIYDHVTLIAFTCKPQGLPQKKSRQSQNVLVTWDCNDFVLENTCKTSKPY 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco01g2572 532 ProSitePatterns Zinc finger Dof-type signature. 143 179 IPR003851 GO:0003677|GO:0006355
Acco01g2572 532 MobiDBLite consensus disorder prediction 1 31 - -
Acco01g2572 532 Pfam Dof domain, zinc finger 138 195 IPR003851 GO:0003677|GO:0006355
Acco01g2572 532 PANTHER CYCLIC DOF FACTOR 2 44 479 IPR045174 GO:0003700|GO:0006355
Acco01g2572 532 MobiDBLite consensus disorder prediction 13 30 - -
Acco01g2572 532 MobiDBLite consensus disorder prediction 211 232 - -
Acco01g2572 532 MobiDBLite consensus disorder prediction 249 265 - -
Acco01g2572 532 MobiDBLite consensus disorder prediction 187 206 - -
Acco01g2572 532 ProSiteProfiles Zinc finger Dof-type profile. 141 195 IPR003851 GO:0003677|GO:0006355
Acco01g2572 532 MobiDBLite consensus disorder prediction 249 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco01g2572 Acco-ChrAcco01 42747812 42754946 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco01g2572 45 478 C2C2-Dof Transcription Factor Family AT5G39660 33.797 1.40e-63 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Acco01g2572 zf-Dof 1.3e-31 No_clan