Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01217 ATGTGGAGTAGATGGTGGTGTGCCGGTGGTGGAGGATCAATTCTGAGGCAAAGGGTGTCTTTTGTTTTTAGTGGAAGCCATGGTTGTGGGGGAAAGGTTCAGCCCTTTGATCCTTTGAGGGGTTTTGAAGGCGCATGTGGTGGAAGGAGAGGAGGGGTGGCGTTTGTGTTGAGGCAGATGAAGAGCGGTGTCTGTTCTACAGCTTCAGTTTCACACCCTGCTGATGGTGTCAGTGGGAATGGGAATAGTAATAATAATGATAATAATAGGAGTAATGATGATAATGGGAATGGAAAAAAAGGGTCTATGTCCTTCCGTGAGGCTAAGAAGCTAATGAGATTGGCGAATGTTGAATCGCTAAAGGAGAAGCTTGAAAGGGAGGAGAAGGAGATTATTCCCTACTGTGAGCTTCTTGAAGAGTGTAAGAAAATGGGTGTTGCAAGAGATGCTGAGGAGGCTGCAACATTTGCACATTGTCTCGATGATGCTGGGGTTATTCTCCTCTTCAGAGACAAGGTCTATCTGCATCCTGATAAGGTGGTGGATATGGTTAGAAGAGCAGTTCCAGTGGCACTAACAGAAGATAGTGATCCAATGATGGAGGAGCTAAAGAAGCTGCAAGAGAAGAAGAGAGAAATTGACACGTTGGCACACAAGCAGGTTCGGAGAGTCCTGTGGTCTGGACTAGGACTTGGTGTGTTTACTGTTGGACTGTTCTTCAGGCTGACATTCTGGGAATTCTCATGGGATGTGATGGAACCTATCACATATTTCACCACTTCCACTGGTTTGGTGGTAGGCTATGCCTACTTCTTGTTCACTTCTAGAGACCCAACTTACCAAGATTTCATGAAGAGACTCTTTCACTCCAGACAGAAGATCCTTCACAAGAACTACAATTTTGATGTTGACAGATTCAATGAGCTCCGATGCAGGTGCCATAAACCTTTGAATGCCAAAACCATTTTCAGAAATCGCTTTGGGGTGGAACAGGATTTGGAGGATGTTTTGCGCAAAGATTAA 1023 0.4506 MWSRWWCAGGGGSILRQRVSFVFSGSHGCGGKVQPFDPLRGFEGACGGRRGGVAFVLRQMKSGVCSTASVSHPADGVSGNGNSNNNDNNRSNDDNGNGKKGSMSFREAKKLMRLANVESLKEKLEREEKEIIPYCELLEECKKMGVARDAEEAATFAHCLDDAGVILLFRDKVYLHPDKVVDMVRRAVPVALTEDSDPMMEELKKLQEKKREIDTLAHKQVRRVLWSGLGLGVFTVGLFFRLTFWEFSWDVMEPITYFTTSTGLVVGYAYFLFTSRDPTYQDFMKRLFHSRQKILHKNYNFDVDRFNELRCRCHKPLNAKTIFRNRFGVEQDLEDVLRKD 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01217 340 MobiDBLite consensus disorder prediction 70 99 - -
Vimu1g01217 340 Coils Coil 107 127 - -
Vimu1g01217 340 Gene3D - 105 182 IPR036388 -
Vimu1g01217 340 Pfam Mitochondrial calcium uniporter 151 309 IPR006769 -
Vimu1g01217 340 MobiDBLite consensus disorder prediction 70 102 - -
Vimu1g01217 340 Coils Coil 199 219 - -
Vimu1g01217 340 PANTHER CALCIUM UNIPORTER PROTEIN, MITOCHONDRIAL 88 314 IPR039055 GO:0051560
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01217 Vimu-Chr1 9502419 9504191 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01217 K20858 - gmx:100788407 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01217 1 9502419 9504191 Vimu1g01217 1 9502419 9504191 ECH
Vimu2g01958 2 14263139 14265411 Vimu1g01217 1 9502419 9504191 PCT