Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi3g0823 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0824 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0825 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0826 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0827 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0828 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0829 . . . . . Adu05g01350 . . Aev09g2450 Aev05g1255 . Ahy15g1317 Aip09g03816 Aip05g01389 . . Amo19g4250 . Apr8g2397 . . Arst5g01721 . Bach4g00307 . . Bva13g00407 Bva14g00496 Car04g01403 Car08g00037 Cca02g02476 Cca06g02034 . . . Dod02g1399 . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa2g02934 . . . . . . . . Lja5g0459 . . Mal1g0595 . Mepo5g00043 . Mesa17g00038 . . . Mtr1g4007 . . . Phco4g00040 . . Psa6g4901 . . Pste1g00731 . . . Pte12g00204 . Pumo8g02598 . Pvu2g0528 . Rops1g02455 . Seca10g00061 . Spst2g00040 Ssu7g0533 Ssu2g3152 Sto2g0482 . . Tpr1g0501 . Trre9g00038 . Tsu01g04684 . Vian10g00035 . Vifa1g04033 . Vimu7g02177 . Viun2g02933 . Vivi2g04259 . Vra11g0040
Vvi3g0830 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva13g00408 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0831 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0832 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
Previous Page 363 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi3g0823 Chr3 7744837 7745157 +
Vvi Vvi3g0824 Chr3 7748100 7749320 -
Vvi Vvi3g0825 Chr3 7759653 7760700 +
Vvi Vvi3g0826 Chr3 7771297 7771873 -
Vvi Vvi3g0827 Chr3 7813667 7815317 -
Vvi Vvi3g0828 Chr3 7826669 7826884 -
Vvi Vvi3g0829 Chr3 7832204 7853054 -
Adu Adu05g01350 Chr05 20365190 20366976 +
Aev Aev09g2450 Chr09 26415764 26418668 +
Aev Aev05g1255 Chr05 8830356 8832744 +
Ahy Ahy15g1317 Chr15 21576475 21578643 +
Aip Aip09g03816 Chr09 144786972 144788320 -
Aip Aip05g01389 Chr05 20779193 20780945 +
Amo Amo19g4250 Chr19 159232166 159233523 +
Apr Apr8g2397 Chr8 34242160 34245229 +
Arst Arst5g01721 Chr5 20413393 20415716 +
Bach Bach4g00307 Chr4 1985954 1989753 -
Bva Bva13g00407 Chr13 1886137 1889196 -
Bva Bva14g00496 Chr14 2379238 2382689 -
Car Car04g01403 Chr04 14330434 14332703 +
Car Car08g00037 Chr08 323397 326272 -
Cca Cca02g02476 Chr02 45912975 45915015 +
Cca Cca06g02034 Chr06 35595198 35597443 +
Dod Dod02g1399 Chr02 16834652 16838737 +
Lasa Lasa2g02934 Chr2 514676232 514677856 -
Lja Lja5g0459 Chr5 4016852 4020998 -
Mal Mal1g0595 Chr1 6843142 6847777 -
Mepo Mepo5g00043 Chr5 422884 425611 -
Mesa Mesa17g00038 Chr17 362581 364913 -
Mtr Mtr1g4007 Chr1 51694804 51699137 +
Phco Phco4g00040 Chr4 268659 271726 -
Psa Psa6g4901 Chr6 427968628 427970982 +
Pste Pste1g00731 Chr1 2288373 2293177 -
Pte Pte12g00204 Chr12 1644045 1648200 -
Pumo Pumo8g02598 Chr8 63192384 63195783 +
Pvu Pvu2g0528 Chr2 4734390 4737763 +
Rops Rops1g02455 Chr1 47560904 47566555 +
Seca Seca10g00061 Chr10 548882 550639 -
Spst Spst2g00040 Chr2 377399 380410 -
Ssu Ssu7g0533 Chr7 9803408 9805275 -
Ssu Ssu2g3152 Chr2 93777821 93781260 +
Sto Sto2g0482 Chr2 4186126 4189455 +
Tpr Tpr1g0501 Chr1 4212982 4215578 -
Trre Trre9g00038 Chr9 464082 465891 -
Tsu Tsu01g04684 Chr01 54172823 54175176 +
Vian Vian10g00035 Chr10 270186 275044 -
Vifa Vifa1g04033 Chr1 619738715 619740866 +
Vimu Vimu7g02177 Chr7 19227972 19231025 -
Viun Viun2g02933 Chr2 33604953 33608313 +
Vivi Vivi2g04259 Chr2 156211292 156214168 +
Vra Vra11g0040 Chr11 320452 323935 -
Vvi Vvi3g0830 Chr3 7856662 7861870 -
Bva Bva13g00408 Chr13 1889826 1892926 -
Vvi Vvi3g0831 Chr3 7888986 7890085 -
Vvi Vvi3g0832 Chr3 7890272 7892314 -