Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0824 ATGCAAGTTTTCTTCTCTTCTAAATCTTCTTTACCAAATCCTCATTTCATACGATCTTTTGGGGATCGGAGGTTTCCAGCCATGGCGGATGAAAAACCACCAGTTGTGGCAGAGAAGACCTTGCATCCTACCTCTCTCTGTAACACCACTTCAATATCAAGAACATTAAGATCTATCCAGCCAGCCCATTACTTATTCAAGGTAGAATCTCTGTCAGTGCTTCTGAACACAGATATTGAAAAATATGAATCAGGTTCATTTGAAGTGGGTGGCTACAAATGGAGCTTGTGTATCTACCCAAATGGGAATAAAAAAAGTGACGGGGAAGGTCACATCTCCCTCTATTTAGAAATATCAGAGGCTCAAAATCTTCCTCTTGGGTGGGAGGTTACTGTCAACTTCAAATTGTTTGTGTTTAATCATATACATGAAAAGTACTTAACTGTCCAAGATGCTGATGGGAAGGTAAGGCACTTCAATGCGATGAAGACTCGATGTGGGTTTGCTCAGTTTCTTTCACTGGATGTTCTCAAGGATCCTCGTAATGGATACTTGATGGATGATTCTTGCATTTTCGGAGCAGAGGTTTTTGTTATTAAATATAGTGGCAAAGGGGAGAGTCTTTCCATGATAAAGGATCCTGTTGATGGTACTTTCACTTGGACGATTGAGAATTTCTCCGCACTGAATCAGGAAGTCCTAGACTCTGAAATATTCACTGTTAAAGAATTGAAATGGCATGTGTTAATGCATTTCCTTCATTTCTCTTCTTTCTTGATTGCAGTGAAGTGGATTAATGTCCAAATGTGA 810 0.3963 MQVFFSSKSSLPNPHFIRSFGDRRFPAMADEKPPVVAEKTLHPTSLCNTTSISRTLRSIQPAHYLFKVESLSVLLNTDIEKYESGSFEVGGYKWSLCIYPNGNKKSDGEGHISLYLEISEAQNLPLGWEVTVNFKLFVFNHIHEKYLTVQDADGKVRHFNAMKTRCGFAQFLSLDVLKDPRNGYLMDDSCIFGAEVFVIKYSGKGESLSMIKDPVDGTFTWTIENFSALNQEVLDSEIFTVKELKWHVLMHFLHFSSFLIAVKWINVQM* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0824 269 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 48 204 IPR008974 GO:0005515
Vvi3g0824 269 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 209 256 IPR008974 GO:0005515
Vvi3g0824 269 Pfam MATH domain 78 198 IPR002083 GO:0005515
Vvi3g0824 269 PANTHER TRAF-LIKE FAMILY PROTEIN 54 250 - -
Vvi3g0824 269 ProSiteProfiles MATH/TRAF domain profile. 216 269 IPR002083 GO:0005515
Vvi3g0824 269 SMART math_3 66 177 IPR002083 GO:0005515
Vvi3g0824 269 CDD MATH 217 251 IPR002083 GO:0005515
Vvi3g0824 269 CDD MATH 63 196 IPR002083 GO:0005515
Vvi3g0824 269 SUPERFAMILY TRAF domain-like 60 204 - -
Vvi3g0824 269 ProSiteProfiles MATH/TRAF domain profile. 61 196 IPR002083 GO:0005515
Vvi3g0824 269 SUPERFAMILY TRAF domain-like 214 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0824 Vvi-Chr3 7748100 7749320 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0824 - - vvi:100259955 507.679