Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0830 ATGGCACCACCTGCAGCTCATGAAATGCAGCAGCTAAAGAATACGCTTAGGCCTAGCAAAAGGCTTTGTTACGTATGGCTGCATGTTCTTCTTCTCTTTGCCCTCTTTGGCCTGTCTAAGTCACAGTCAATTGTCGATACGCTTCCGGGGTTTTCCGGTGAACTTCCATTCAAACTTGAAACTGGGTATGTGAGTGTAGGAGAATTGAATGATGTGGAGCTATTCTACTACTTCATCGAGTCGGAGCGCGACCCTGCTAGAGACCCTCTTATTCTCTGGCTCACCGGAGGCCCTGGTTGTTCTGGTTTCTCAGGACTAGTATACGAAATTGGTCCATTAAGATTCAACTATACAGCTTTCAATGGGAGCCTCCCAAGTTTAGAGCTGAATCCGTACTCATGGACAAAGGTTGCCAGTATAATATTTTTAGACGCACCAGTAGGCACTGGGTTCTCTTATGCAACAAATCCGGATGATTACTATGCTTCTGACACAATATCAGCCAGGGATAACTACATATTTATCAGGAAGTGGTTGATCGATCACCCCAGATTTCTATATAATCCACTTTACATTGGAGGCGATTCCTATTCGGGCATCATTGTTCCAATTCTCACTCTGGAGATAGCAAATGGTATACAAATGGGACTTAAGCCACTGATGACTCTCATGGGATATATTCTTGGCAACCCAGTAACACATTTGCATAATGATGAGAATTCAAGAATTCCATTTGCTCATAGAATAGCACTTATATCAGATGAACTCTATGAGTCAGCCAAAAATGCCTGTAAAGGTGAATTTATTGATCCAGATGAAAGCAATGGAGAGTGCATGGAGGTTCTGGCAGTTATTACAAAGTGCACTGAGAAGCTAAACAGTGCACATATTTTGGAACCCGTGTGTGCTCTTGATTCCCCAAAACCAAAGGAATCAAAACTAAAATGGAGCCTCAACCATATAGAAGATGTGTCCTCAGACATGATCAGCCTTCCAGTTCCTCAACGCAGCGAATTATGGTGTCGGAATTACAATTATTTGCTCTCTTACATATGGGAAAATGACGAGGCTGTTCAAGAAGCTCTTCATGTCCGAAATGTATGTCCTTAA 1110 0.4261 MAPPAAHEMQQLKNTLRPSKRLCYVWLHVLLLFALFGLSKSQSIVDTLPGFSGELPFKLETGYVSVGELNDVELFYYFIESERDPARDPLILWLTGGPGCSGFSGLVYEIGPLRFNYTAFNGSLPSLELNPYSWTKVASIIFLDAPVGTGFSYATNPDDYYASDTISARDNYIFIRKWLIDHPRFLYNPLYIGGDSYSGIIVPILTLEIANGIQMGLKPLMTLMGYILGNPVTHLHNDENSRIPFAHRIALISDELYESAKNACKGEFIDPDESNGECMEVLAVITKCTEKLNSAHILEPVCALDSPKPKESKLKWSLNHIEDVSSDMISLPVPQRSELWCRNYNYLLSYIWENDEAVQEALHVRNVCP* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0830 369 PRINTS Carboxypeptidase C serine protease (S10) family signature 130 142 IPR001563 GO:0004185|GO:0006508
Vvi3g0830 369 PRINTS Carboxypeptidase C serine protease (S10) family signature 143 153 IPR001563 GO:0004185|GO:0006508
Vvi3g0830 369 PRINTS Carboxypeptidase C serine protease (S10) family signature 178 203 IPR001563 GO:0004185|GO:0006508
Vvi3g0830 369 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 44 365 IPR001563 GO:0004185|GO:0006508
Vvi3g0830 369 Pfam Serine carboxypeptidase 49 365 IPR001563 GO:0004185|GO:0006508
Vvi3g0830 369 Gene3D alpha/beta hydrolase 37 368 IPR029058 -
Vvi3g0830 369 FunFam Serine carboxypeptidase-like 19 38 308 - -
Vvi3g0830 369 SUPERFAMILY alpha/beta-Hydrolases 41 365 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0830 Vvi-Chr3 7856662 7861870 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0830 K16296 - vvi:100242950 739.569