Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0827 ATGGCGGACGAAAAACTACAAGCAATATCAAGAACATTAAGATCTATCCAACCAGCCCATTACTTATTCAGGGTAGAGTCTATGTCAGTGCTTCTGGACACGAGCATTGAAAAATATGAATCAGGGTCATTCGAAGTGGGTGGCTACAAATGGAGATTGTGTCTCTACCCAAATGGGAATAAAAAAAGTGATGGGGACGGTCACATCTCCCTCTATTTAGTAATATCAGACACTCAAAATCTTCCTCTCGGGTGGGAGGTTACTGTAAGCTTCAAATTGTTTGTCTTTAATCATATACATGAAGAGTACTTAACTGTCCAAGATACTGATGGGAAGGTAAGGCACTTCAATGTGATGAAGACTCAATGTGGGTTTGCTCAGTTTCTTCCACTGGATGTTCTCACGGATCCTTGTAATGGATACTTAATGGATGACTCCTGCATTTTCGGAGCAGAAGTTTTTGTTATTAAGTATAGTGGCAAAGGGGAGTGTCTTTCCATGATAAAGGAACCTGACGATGGTACTTTCACTTGGATGATTGAGAATTTCTCCAGACTGAAACAGGAAGCCATTTACTCTGAAATATTCACTGTTAAAGATTTCAAATGGAAGTTGGTTGTCTACCCCAAAGGAAATTATAAGGCAAAGAACAAAAGCCTGTCCCTCTTTCTAGAGCTGGCTAATCGTGGAACACTTCATCATCAAAGGAAATTGTATACTGAATTCGAGTTGTTGGTAAAGGAGCAATGCAATGGTGGACATGTTAAACCATCGCATGTTAAATTAAATGGTCAGACTTGGTTCTGTGACTCGATCAAAGATTGGGGTTTTTCTAATATGATCTCTCTGAGTGATCTCAAGGACAAATCCAACCACTTCATATTAAATGATACTTTGATAGTCGAAGCAAAGATTATGCTCATGATGCATTCGAAGAATATCTAA 945 0.3905 MADEKLQAISRTLRSIQPAHYLFRVESMSVLLDTSIEKYESGSFEVGGYKWRLCLYPNGNKKSDGDGHISLYLVISDTQNLPLGWEVTVSFKLFVFNHIHEEYLTVQDTDGKVRHFNVMKTQCGFAQFLPLDVLTDPCNGYLMDDSCIFGAEVFVIKYSGKGECLSMIKEPDDGTFTWMIENFSRLKQEAIYSEIFTVKDFKWKLVVYPKGNYKAKNKSLSLFLELANRGTLHHQRKLYTEFELLVKEQCNGGHVKPSHVKLNGQTWFCDSIKDWGFSNMISLSDLKDKSNHFILNDTLIVEAKIMLMMHSKNI* 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0827 314 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 164 311 IPR008974 GO:0005515
Vvi3g0827 314 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 4 161 IPR008974 GO:0005515
Vvi3g0827 314 Coils Coil 307 314 - -
Vvi3g0827 314 ProSiteProfiles MATH/TRAF domain profile. 18 153 IPR002083 GO:0005515
Vvi3g0827 314 PANTHER TRAF-LIKE FAMILY PROTEIN 11 307 - -
Vvi3g0827 314 SUPERFAMILY TRAF domain-like 173 307 - -
Vvi3g0827 314 ProSiteProfiles MATH/TRAF domain profile. 173 305 IPR002083 GO:0005515
Vvi3g0827 314 SMART math_3 175 286 IPR002083 GO:0005515
Vvi3g0827 314 SMART math_3 25 134 IPR002083 GO:0005515
Vvi3g0827 314 SUPERFAMILY TRAF domain-like 17 161 - -
Vvi3g0827 314 CDD MATH 20 153 IPR002083 GO:0005515
Vvi3g0827 314 Pfam MATH domain 180 305 IPR002083 GO:0005515
Vvi3g0827 314 Pfam MATH domain 29 155 IPR002083 GO:0005515
Vvi3g0827 314 CDD MATH 174 305 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0827 Vvi-Chr3 7813667 7815317 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0827 - - vvi:100258339 640.188