Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi18g1966 . . . . . . . . . . . . . . . . . . . Apr6g0882 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1967 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1968 . . . . . . . . Aev04g3533 . . . Aip03g01011 . . . Amo13g1374 . . . . . . . . . Bva07g00574 Bva09g02054 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1969 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva07g00576 Bva09g02055 . . . . . . . . . . . . . Gma06g02881 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1970 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva07g00577 . . . . . . . . . . . . . . Gma06g02880 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1971 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1972 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1973 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1974 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g1975 . . . . . . . . . . . . . . . . . . . Apr6g0879 . . . . . . . Bva09g01901 . . . . . . . . . . . . . Gma06g02419 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal2g2233 . . . . . . . Mtr3g2589 . . . . . . . Psa5g2604 . . . . . . . . . . . . . . . . . . . . . . . . . Tsu03g02431 . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Apr Apr6g0882 Chr6 13297361 13304299 +
Vvi Vvi18g1966 Chr18 27244856 27249772 +
Apr Apr6g0882 Chr6 13297361 13304299 +
Vvi Vvi18g1967 Chr18 27252795 27252944 +
Vvi Vvi18g1968 Chr18 27268865 27284577 +
Aev Aev04g3533 Chr04 33417872 33419674 -
Aip Aip03g01011 Chr03 9690695 9693100 +
Amo Amo13g1374 Chr13 18245831 18252181 -
Bva Bva07g00574 Chr07 7508445 7515015 +
Bva Bva09g02054 Chr09 16909691 16914874 +
Vvi Vvi18g1969 Chr18 27298792 27301312 +
Bva Bva07g00576 Chr07 7534040 7538080 +
Bva Bva09g02055 Chr09 16921107 16925478 +
Gma Gma06g02881 Chr06 52586563 52589273 -
Vvi Vvi18g1970 Chr18 27304059 27305808 -
Bva Bva07g00577 Chr07 7538663 7542348 -
Gma Gma06g02880 Chr06 52583088 52585273 +
Vvi Vvi18g1971 Chr18 27308841 27314331 +
Vvi Vvi18g1972 Chr18 27319002 27320967 -
Vvi Vvi18g1973 Chr18 27324239 27325815 -
Vvi Vvi18g1974 Chr18 27337565 27338911 +
Vvi Vvi18g1975 Chr18 27341122 27342959 +
Apr Apr6g0879 Chr6 13270053 13274667 +
Bva Bva09g01901 Chr09 14753495 14754040 -
Gma Gma06g02419 Chr06 46337005 46343404 +
Mal Mal2g2233 Chr2 27570242 27575499 +
Mtr Mtr3g2589 Chr3 39862276 39865405 -
Psa Psa5g2604 Chr5 199762481 199767184 +
Tsu Tsu03g02431 Chr03 28169147 28171192 +