Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g2604 ATGGAAGACTGTTCACAAAACTCAAAATGGAAGTATCATGTTTTCTTGAGTTTTAGGGGAGAAGACACGCGCTTAGGCTTCACCGATCACCTATATGCAGCTTTGGTGCGCAAGAGTATAATAACTTTCAGAGATGATGAAGAACTTGCAAGAGGTGAAGTAATCTCACAAAAGCTACTCCATGCCATTGAGGAATCACTCTCAGCAGTTGTTATAATCTCCAAAAACTATGCTAACTCAGCTTGGTGTTTGGATGAGTTAGTCAAGATTCTCAAATCTAAACGCTTGTCAGGACAACAAGTGTTCCCTATTTTCTATGGTGTGGATCCCTCTGATGTAAGGAATCAAAGGGGAAGTTTTGATGAGGCTTTTAGGAAACATGAAAAAAGTTTTGCTGAAAGCAAAGAGAAGGTGCAAAAGTGGAGAGATGCATTGAGAGAGGTCGCCAACTTATCAGGCTGGGATTCTAAGGATCAGGAAGCTGGTGCATTAGATCCACAAAAGATATGGAAGCTGTTTGAATCAAGTGACAAAGAACTCTTACAGTCATATGCGCGTCAAATGTTTGACTTCATTTATCCTATGTACTTCAAAATCCCACCTAGATTTGATAATCAGAATTTTTTTCCATTGAGCTCGTCATATGTGTCAAAACACGATTCATTTGCATCAGTAACAGTGGACATCCCTGCTGATTGTCTTTCAAGTGACTGGTGGGGGGTGGCTGTACTTGTGGCCTTAGAAGCTGAAGCTCCACAGGATTCAGAGGAAGGTGCTAAAAGTTTTTTTATGAGATCTATGCGCTTGTGGTGGAAATTTGATACTCTAGGACCCGAAGACAGCCCTTCCTTATCACTGTCTGCAGGTTCAACAGCATATAGTAATCTTTACCTCGTCACTATGGTAGTGAGTGGTGATTTTATATACATACAGAGACACCGAAGGGAGGACCGAAGAAGGTTCATGCATGAAGAGTTTAGCAAACATAGAAAGCCAGAGTTCAAGGAAAACAGTTCGTTGCGCTTCGAAGTGCGAGTAGGAGGATGCAAGATAAGGAAGTGTGGGTGGCATATGTTGTGCAAGGAAGATTATCTTGAAGACTTGCAAATGCTAAACAGCGGTGGACTTGTAGGACCTTCAGATTCCGGGCATTCAGCTGGTATGAACAAATCATCTGTGGATGAATCCAAGGGGAAGGATATTACTGTTTTGAATGTGAAGAACATAGAAAGGTCCAATGAGAACTTCTCTTTGGGGAAAATGTTTCACACCATTAAACAAGGACTTGGTTTAAGCGTGCTGGCTTTGATATCAATGATGGTTGGGGCTAGAATATTCCTTTCGCCAACGCATGGTTTACGCTTCAAAAAGTCCACCACAACAATCGAGACCGTATCGAATAAACTATTAAAATCACATTGGATTACCTCCAATGATATCGTTCTTAAGGTCAACGCAACGCAATTTCAGCGCGGTCCTTGTAACAGAAATGTGAGTCCACGGTTTTCATTTCAACCGTACCATCCACCAAGGAGATTGAGTTTCTCTAAGAGCCAATTTTGTTGTAACTTAACAAAATGA 1581 0.4137 MEDCSQNSKWKYHVFLSFRGEDTRLGFTDHLYAALVRKSIITFRDDEELARGEVISQKLLHAIEESLSAVVIISKNYANSAWCLDELVKILKSKRLSGQQVFPIFYGVDPSDVRNQRGSFDEAFRKHEKSFAESKEKVQKWRDALREVANLSGWDSKDQEAGALDPQKIWKLFESSDKELLQSYARQMFDFIYPMYFKIPPRFDNQNFFPLSSSYVSKHDSFASVTVDIPADCLSSDWWGVAVLVALEAEAPQDSEEGAKSFFMRSMRLWWKFDTLGPEDSPSLSLSAGSTAYSNLYLVTMVVSGDFIYIQRHRREDRRRFMHEEFSKHRKPEFKENSSLRFEVRVGGCKIRKCGWHMLCKEDYLEDLQMLNSGGLVGPSDSGHSAGMNKSSVDESKGKDITVLNVKNIERSNENFSLGKMFHTIKQGLGLSVLALISMMVGARIFLSPTHGLRFKKSTTTIETVSNKLLKSHWITSNDIVLKVNATQFQRGPCNRNVSPRFSFQPYHPPRRLSFSKSQFCCNLTK* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g2604 526 PANTHER TOLL/INTERLEUKIN-1 RECEPTOR-LIKE PROTEIN 5 164 - -
Psa5g2604 526 SMART till_3 11 151 IPR000157 GO:0007165
Psa5g2604 526 Gene3D - 4 172 IPR035897 -
Psa5g2604 526 ProSiteProfiles TIR domain profile. 10 176 IPR000157 GO:0007165
Psa5g2604 526 Pfam TIR domain 11 157 IPR000157 GO:0007165
Psa5g2604 526 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 154 IPR035897 -
Psa5g2604 526 PANTHER TMV RESISTANCE PROTEIN N-LIKE 5 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g2604 Psa-Chr5 199762481 199767184 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa5g2604 11 156 Miscellaneous Gene Families AT5G44900 39.041 3.51e-24 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g2604 - - mtr:MTR_3g080460 485.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g2604 5 199762481 199767184 Psa5g2604 5 199762481 199767184 ECH