Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1971 ATGGAACTGAAACTGTGTCACACACCAATACTCACATTTTCATCTCAGAGGTTCTTCTTCTTCTTCTTCTTCTTCTTATTATTATTATTATTATTATTATTATTATTATTATTGAATTGTTTTGCTTCCAGGTTCTGTTTGGATTCGTGGATAAGCAAGCAGAGATCGTTCAAGAAGCATTTCCGAATGCTCACTGAGAAATGGAGGTTTCAAATTCAGGAGATTTCAAAGGGTCAACACTCCACCAAGCACAATTCAGTGCACATGGTCAAAGAAGGTGAAACTTTGAGTTCAATATCGAAGCAATATGGGGTGTCCATATATTCAATTGCTGCAGCTAATAAGAATATAGAGGATATTGACCTTGTATTCTGTGGGCAGCACCTCAATATTCCTTCTTCTGCTGTGGGAGAGACTCAGAAGTTTCAAACTGAGAAAAGCAAGTTATCTAGCTTTGATACATTGAAAAGACATCAACACTCTTTGGAAGTCTTGGGCGGGCGGTTAAACCAAAAGTTATGCACTGTGGCACTATCCTTCCATAGCTTATCACATGCTAAAGCAACTGGTTATTTTCTAGTTCTGGTTCCTCTTATAGCATTTTGCATCAGATGCATAATTGGTGCCTTTCAAAATAGAGTTGTTGGAGATTTGAGACATCAAGCTGTTAATGAATCAGAGGTAGATTATCATGGATCCAAAAGTGTACGGTGGAAATCTGCTCTTGATGACATAAGGGAACCAGATACTCTGGACACTGGACTGCAACCGGATTCCATTAATCCTTCAGAAGTTCAAACTCAAGGTTCTGCTGAGGAGGTGTCTCATGCTTATGGAAAACTCGAACATGATTATCAGCAATTTCTGTCAGAATGTGGAATAAGCAAATGGGGGTACTGGCGTGGAGGTTCCCATGGATAG 921 0.3931 MELKLCHTPILTFSSQRFFFFFFFFLLLLLLLLLLLLLNCFASRFCLDSWISKQRSFKKHFRMLTEKWRFQIQEISKGQHSTKHNSVHMVKEGETLSSISKQYGVSIYSIAAANKNIEDIDLVFCGQHLNIPSSAVGETQKFQTEKSKLSSFDTLKRHQHSLEVLGGRLNQKLCTVALSFHSLSHAKATGYFLVLVPLIAFCIRCIIGAFQNRVVGDLRHQAVNESEVDYHGSKSVRWKSALDDIREPDTLDTGLQPDSINPSEVQTQGSAEEVSHAYGKLEHDYQQFLSECGISKWGYWRGGSHG* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1971 306 SUPERFAMILY LysM domain 87 132 IPR036779 -
Vvi18g1971 306 CDD LysM 87 131 IPR018392 -
Vvi18g1971 306 MobiDBLite consensus disorder prediction 254 269 - -
Vvi18g1971 306 ProSiteProfiles LysM domain profile. 86 131 IPR018392 -
Vvi18g1971 306 Pfam LysM domain 88 132 IPR018392 -
Vvi18g1971 306 SMART LysM_2 87 132 IPR018392 -
Vvi18g1971 306 MobiDBLite consensus disorder prediction 250 269 - -
Vvi18g1971 306 Gene3D LysM domain 79 146 IPR036779 -
Vvi18g1971 306 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 73 139 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1971 - - vvi:100241456 556.984