Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1970 ATGGGGAGTTCCAGTGAGTTAGTTTTTTCGGGTTTTTTGGCCTTGCTTTGGCTCAGTGCTAGAGCTTGTTCACAGGCACAAGAGCCCCAAGTGCCTTGTTTCTTCATCTTTGGTGACTCACTGGTGGACAATGGAAACAACAATGGAATCCTCACACTTTCCAGAGCTAATTACAGGCCTTACGGCATTGACTTTCCTCAAGGAGTCACTGGCCGGTTCACTAATGGTCGAACTTATGTTGATGCTCTTGCTCAACTTCTAGGGTTTTCTAATTATATTCCACCTTATGCGAGAACCCGGGGACCTGCACTACTTGGGGGAGTGAATTATGCATCAGGAGCAGCTGGTATTCGTGATGAAACCGGCAACAATCTGGGAGATCACATTCCCATGAACCAACAGGTTTCCAACTTTGCCAATACAGTTGTGCAGATGAGGCGGTTTTTCAGAGGAGATACCAATGCTCTAAACAGCTATCTTAGTAAATGCATCTTCTATTCTGGGATGGGAAGCAATGACTACCTTAACAACTATTTCATGCCCGATTTCTATTCAACTGGTTCGGATTACACCACAAAGGCTTATGCTGCTGCACTTCTTCAGGACTACTCTCGACAGCTAACGGAATTATATGAACTGGGAGCTCGTAAGGTGGTTGTGACCTCGGTTGGCCAAATTGGCTGCATACCATATCAGTTGGCCCGATTTAATGGTAGTGGTAGCCAGTGCAATGAAAGTATCAACAAAGCAATTATTTTATTCAACACGGGGCTTCGAAAGCTGGTTGATCGATTCAACAATGGTCAATTGCCTGGAGCCAAGTTTGTGTACCTGGATTCATTCCAAAACTCCAAAGACCTAGTACTAAATGCAGCTACTTATGGATTTGAAGTAGTAGACAAAGGATGCTGTGGGGTGGGAAAAAATAACGGACAGATAACTTGTCTTCCCCTTCAAGAACCTTGTGATGACCGCAGAAAGTACATCTTCTGGGATGCCTTTCATCCAACCGATGTCGCCAACATCATAATGGCCAAGAAGTCATTCAGTTCCAAATCACAATCTTATGCTTACCCCATAAATATACAGCAATTGGCCATGCTTTAA 1107 0.4417 MGSSSELVFSGFLALLWLSARACSQAQEPQVPCFFIFGDSLVDNGNNNGILTLSRANYRPYGIDFPQGVTGRFTNGRTYVDALAQLLGFSNYIPPYARTRGPALLGGVNYASGAAGIRDETGNNLGDHIPMNQQVSNFANTVVQMRRFFRGDTNALNSYLSKCIFYSGMGSNDYLNNYFMPDFYSTGSDYTTKAYAAALLQDYSRQLTELYELGARKVVVTSVGQIGCIPYQLARFNGSGSQCNESINKAIILFNTGLRKLVDRFNNGQLPGAKFVYLDSFQNSKDLVLNAATYGFEVVDKGCCGVGKNNGQITCLPLQEPCDDRRKYIFWDAFHPTDVANIIMAKKSFSSKSQSYAYPINIQQLAML* 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1970 368 Pfam GDSL-like Lipase/Acylhydrolase 35 347 IPR001087 GO:0016788
Vvi18g1970 368 Gene3D SGNH hydrolase 19 355 IPR036514 -
Vvi18g1970 368 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 14 366 - -
Vvi18g1970 368 SUPERFAMILY SGNH hydrolase 34 346 - -
Vvi18g1970 368 CDD SGNH_plant_lipase_like 32 345 IPR035669 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1970 Vvi-Chr18 27304059 27305808 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1970 19 365 Acyl Lipid Metabolism Gene Families AT4G10950 35.411 2.96e-69 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1970 - - vvi:100263710 752.666