Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1969 ATGGCTAAGTTTTGGGTATGTTTCTTGTGTTTGTTGTTGGTGGGGAGTTTAGTTTCAGGCCAAGATGATGATCAGTTTAGTCCAGGAGGGGCAAAGAGAGAGATGGTTCCTGCGATGTTTATCTTTGGAGACTCTCTCATTGACAATGGGAATAACAATAACCTTCCTTCTTTTGCAAAGGCCAACTATTTTCCCTATGGGATTGATTTTGAAGGAGGCCCTACTGGACGATTCTCCAATGGTTACACCATGGTTGACGAAATAGCTGAACAGCTAGGACTACCTCTCACTCCTGCATATTCTGAAGCTTCTGGAGAGGAAGTGCTTCATGGTGTCAACTTTGCCTCAGCAGCTGCTGGAATACTGGACATCACTGGAAGAAACTTTGTGGGGCGCATACCATTTAACCAACAGATACGCAACTTTGAGAACACGCTCGATCAAATTACCGACAATCTTGGAGCTGATAATGTGGCTGAGGCAATAGCAAAGTGCATATTCTTTGTGGGAATGGGCAGCAATGACTACCTAAACAACTATCTCATGCCCAACTATGCGACTAGGAATCAGTATAATGGCCAACAATTTGCGAACCTTTTGATTCAACAGTACAATAGGCAACTCAATACCCTTTACAATCTTGGAGCCCGGAGGTTTGTCCTGGCTGGGCTGGGAATTATGGGTTGCATTCCAAGCATCCTAGCTCAAAGTCCGACTAGCCGCTGCTCGGACGACGTGAACCATCTCATTCTACCATTTAATGCAAACGTGAGGGCGATGGTTAACAGACTCAATTCCAATCTCCCTGGGGCTAAGTTCATTTACATTGACGTCTACCGCATGTTCCAAGATATCCTTTCCAACTCAAGAAACTATGGATTTAGTGTTATAAACCGTGGTTGTTGTGGAATTGGGCGAAACAGTGGGCAGATTACATGTCTTCCATTCCAAACTCCATGCTCAAACCGAGAACAGTATGTGTTCTGGGATGCTTTCCACCCAACAGAAGCCGTGAACATCATAATGGGGAGGAAGGCATTTAACGGGGATAAGAGCGCTGTTTACCCCATGAACATAGAGCAGCTTGCCAATCTCGATCTCGAGCCGAACGAACAGAAACCCTAG 1125 0.4533 MAKFWVCFLCLLLVGSLVSGQDDDQFSPGGAKREMVPAMFIFGDSLIDNGNNNNLPSFAKANYFPYGIDFEGGPTGRFSNGYTMVDEIAEQLGLPLTPAYSEASGEEVLHGVNFASAAAGILDITGRNFVGRIPFNQQIRNFENTLDQITDNLGADNVAEAIAKCIFFVGMGSNDYLNNYLMPNYATRNQYNGQQFANLLIQQYNRQLNTLYNLGARRFVLAGLGIMGCIPSILAQSPTSRCSDDVNHLILPFNANVRAMVNRLNSNLPGAKFIYIDVYRMFQDILSNSRNYGFSVINRGCCGIGRNSGQITCLPFQTPCSNREQYVFWDAFHPTEAVNIIMGRKAFNGDKSAVYPMNIEQLANLDLEPNEQKP* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1969 374 SUPERFAMILY SGNH hydrolase 113 345 - -
Vvi18g1969 374 Pfam GDSL-like Lipase/Acylhydrolase 40 344 IPR001087 GO:0016788
Vvi18g1969 374 CDD SGNH_plant_lipase_like 37 350 IPR035669 -
Vvi18g1969 374 Gene3D SGNH hydrolase 29 350 IPR036514 -
Vvi18g1969 374 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED 17 363 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1969 Vvi-Chr18 27298792 27301312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1969 36 364 Acyl Lipid Metabolism Gene Families AT4G10950 38.209 7.24e-81 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1969 - - vvi:100258563 754.207