Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1975 ATGGATGCCGACAAGATTGTCAAAGGCGAGGAAATATCGGCATCACTTGTTACAGCAATGGACAAGTCCATGTTTTGCATTGTTGTTTTGTCCAAAAACTATGCTTCTTCCACGTGGTGTTTGGACGAGCTTGTTCAGATCCTCAAGTGCAAAAATGCCAAGAAACGAACAGTTTTGCCCATCTTCTACAACGTAAATCCTTCTGATGTACGAGAACAGAAAGGGAGTTTTGCAAAAGCCTTCGCTAAACTGGAAGAGAAGTTCAAGGAGGAGATGGAGAGGGTGAAGATGTGGAAGCAGGCTCTCACTGAAGTTGCTAATGTATCTGGCTGGGATGCCAGGGACAGGCATGAGCCCACGCTTATCAAGGAAATTGTCCAATACATTTCTGATGGATTGATTAATAAATCTTCAAAAGACGTTGAGGCCATGCAAGGGCAGGCAAAGGAGCGAATTTCGGTGCTCAATATTCCTACTTCACCGAGTATTGTGGAAAGGGGTGAATTCCCACTTAGGAGCAAAATGAAAATCAATCGAGTAAAAGAAATAGATGCCAAGGCCATGGAAGTATATTCCCACTTAGAGATAAGTGAACCTGATGTTACCATTTCGCCTACTATTTGGGGAAAGAAGAGAAAGAGGGAAATTAAGTAA 654 0.4281 MDADKIVKGEEISASLVTAMDKSMFCIVVLSKNYASSTWCLDELVQILKCKNAKKRTVLPIFYNVNPSDVREQKGSFAKAFAKLEEKFKEEMERVKMWKQALTEVANVSGWDARDRHEPTLIKEIVQYISDGLINKSSKDVEAMQGQAKERISVLNIPTSPSIVERGEFPLRSKMKINRVKEIDAKAMEVYSHLEISEPDVTISPTIWGKKRKREIK* 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1975 217 Coils Coil 81 101 - -
Vvi18g1975 217 SMART till_3 1 108 IPR000157 GO:0007165
Vvi18g1975 217 ProSiteProfiles TIR domain profile. 1 133 IPR000157 GO:0007165
Vvi18g1975 217 Gene3D - 1 140 IPR035897 -
Vvi18g1975 217 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 111 IPR035897 -
Vvi18g1975 217 Pfam TIR domain 2 140 IPR000157 GO:0007165
Vvi18g1975 217 PANTHER TMV RESISTANCE PROTEIN N-LIKE 1 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1975 Vvi-Chr18 27341122 27342959 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1975 4 127 Miscellaneous Gene Families AT5G44900 31.200 1.13e-16 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1975 - - vvi:104882737 413.69