Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g1441 . . . . . . . . . . . . . . . . . . . . . Arst4g04113 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu1g01162 . Lasa3g00463 . . . . . . . . . . . . . Mepo3g00480 . . . . . . . . . Phco3g03060 . . . . . Pste5g00421 . . . . . Pumo5g00591 . Pvu8g0192 . Rops8g00297 . Seca2g00296 . Spst1g01554 . . . . . . . Trre13g00441 . . . Vian2g00191 . Vifa1g00674 . Vimu6g01155 . Viun5g00291 . Vivi6g00703 . .
Vvi1g1442 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Gma02g00883 . Gma08g00965 . Gso2g0810 . Gso2g0810 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1443 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1444 . . . . Adu09g03009 . . . . . . . . . . . . . . . Arst9g04033 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa6g05014 . . . . . . . . . . . . . Mepo4g05047 . . . . . . . . . Phco6g03214 . . . . . Pste4g00089 . . . . . Pumo3g00040 . Pvu7g0029 . Rops6g03610 . . . Spst10g01720 . . . . . . . Trre1g06423 . . . Vian3g00028 . . . . . Viun7g04213 . . . . .
Vvi1g1445 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu3g02576 . Lasa7g03946 . . . . . . . . . . Lja4g1051 . . . . . . . . . . Phac2g02720 . Phco4g02023 . . . . . . . . . . . Pumo6g01232 . Pvu2g1791 . . . Seca12g05706 . . . . . . . . . . . . . Vian1g02673 . . . Vimu11g01858 . Viun3g02261 . . . . .
Vvi1g1446 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1447 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa7g03947 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pvu2g1790 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1448 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g1449 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva05g00043 . . . . . . . . . . . . . . . Gma18g00069 . . . . . . . . . . . . . . . . . . Lasa5g02611 . . . . . . . . . . . . . Mepo3g06221 . . . . . Mtr3g2807 . . . Phco2g02972 . . . Psa5g2232 . Pste7g02397 . . . . . Pumo1g00447 . Pvu1g2694 . Rops11g03719 . Seca6g01691 . Spst1g01895 . . . Sto3g2659 . Tpr2g4676 . Trre5g03090 . Tsu07g02713 . Vian2g03178 . Vifa2g02452 . Vimu6g01517 . Viun1g03452 . Vivi3g03369 . . .
Vvi1g1450 . . . . Adu10g00686 . . . . . . Ahy20g0968 . Aip10g01002 . . . . . . Arst10g00877 . . . . . Bva06g01744 Bva05g00044 . . . . . . . Dod04g0612 . . . . . . . Gma18g00067 . . . . . . . . . . . . . . . . . . Lasa5g02609 . . . . . . . . . . . . . Mepo3g06220 . . . . . Mtr3g2806 . . . Phco2g02973 . . . Psa5g2233 . Pste7g02398 . . . . . Pumo1g00448 . Pvu1g2695 . Rops11g03718 . Seca6g01690 . Spst1g01894 . . . Sto3g2655 . Tpr2g4671 . Trre5g03088 . Tsu07g02712 . Vian2g03179 . Vifa2g02451 . Vimu6g01516 . Viun1g03453 . Vivi3g03370 . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Gma Gma02g00883 Chr02 8882980 8890732 +
Gso Gso2g0810 Chr2 8685362 8693182 +
Adu Adu10g00686 Chr10 8207778 8211651 -
Arst Arst10g00877 Chr10 7855854 7860369 -
Gma Gma18g00067 Chr18 532874 536473 -
Lasa Lasa5g02609 Chr5 492664230 492667847 -
Mepo Mepo3g06220 Chr3 76380546 76384968 -
Phco Phco2g02973 Chr2 58565960 58569796 +
Pste Pste7g02398 Chr7 22734465 22739800 +
Pumo Pumo1g00448 Chr1 6142810 6147449 +
Pvu Pvu1g2695 Chr1 51601924 51606868 +
Rops Rops11g03718 Chr11 70850250 70858093 -
Seca Seca6g01690 Chr6 71353326 71358407 -
Spst Spst1g01894 Chr1 27118084 27122041 -
Trre Trre5g03088 Chr5 26056140 26060133 -
Vian Vian2g03179 Chr2 52256353 52262110 +
Vifa Vifa2g02451 Chr2 642137668 642140736 -
Vimu Vimu6g01516 Chr6 14309880 14314010 -
Viun Viun1g03453 Chr1 41468991 41473286 +
Vivi Vivi3g03370 Chr3 56723727 56727794 +
Vvi Vvi1g1441 Chr1 20788641 20790234 +
Arst Arst4g04113 Chr4 119490398 119501473 -
Lapu Lapu1g01162 Chr1 24601486 24610741 +
Lasa Lasa3g00463 Chr3 31516873 31526580 -
Mepo Mepo3g00480 Chr3 6818472 6821292 -
Phco Phco3g03060 Chr3 56728145 56736240 -
Pste Pste5g00421 Chr5 2783880 2792521 +
Pumo Pumo5g00591 Chr5 11692387 11702333 +
Pvu Pvu8g0192 Chr8 1624515 1626340 +
Rops Rops8g00297 Chr8 5802899 5812105 +
Seca Seca2g00296 Chr2 4168493 4178614 -
Spst Spst1g01554 Chr1 19322017 19329771 -
Trre Trre13g00441 Chr13 3433342 3446339 -
Vian Vian2g00191 Chr2 1900093 1901463 +
Vifa Vifa1g00674 Chr1 112278640 112289950 -
Vimu Vimu6g01155 Chr6 11923969 11924880 -
Viun Viun5g00291 Chr5 1683908 1692237 +
Vivi Vivi6g00703 Chr6 21729370 21741307 +
Vvi Vvi1g1442 Chr1 20795340 20804887 +
Gma Gma02g00883 Chr02 8882980 8890732 +
Gma Gma08g00965 Chr08 8129075 8132559 +
Gso Gso2g0810 Chr2 8685362 8693182 +
Gso Gso2g0810 Chr2 8685362 8693182 +
Vvi Vvi1g1443 Chr1 20819229 20820001 +
Vvi Vvi1g1444 Chr1 20822810 20824403 +
Adu Adu09g03009 Chr09 117701599 117702645 -
Arst Arst9g04033 Chr9 115585832 115586821 -
Lasa Lasa6g05014 Chr6 681234681 681235703 -
Mepo Mepo4g05047 Chr4 59595953 59596957 -
Phco Phco6g03214 Chr6 52620708 52621685 -
Pste Pste4g00089 Chr4 923325 924212 +
Pumo Pumo3g00040 Chr3 649385 650389 +
Pvu Pvu7g0029 Chr7 201437 202399 +
Rops Rops6g03610 Chr6 61073708 61074706 -
Spst Spst10g01720 Chr10 17623201 17624208 -
Trre Trre1g06423 Chr1 67177962 67179014 -
Vian Vian3g00028 Chr3 237993 238901 +
Viun Viun7g04213 Chr7 40561239 40562180 -
Vvi Vvi1g1445 Chr1 20828338 20830514 +
Lapu Lapu3g02576 Chr3 48076820 48081269 -
Lasa Lasa7g03946 Chr7 627045392 627046452 +
Lja Lja4g1051 Chr4 9013605 9018093 -
Phac Phac2g02720 Chr2 28794668 28811075 -
Phco Phco4g02023 Chr4 40271143 40282484 -
Pumo Pumo6g01232 Chr6 16340629 16348341 -
Pvu Pvu2g1791 Chr2 32391637 32392020 -
Seca Seca12g05706 Chr12 148680253 148689413 +
Vian Vian1g02673 Chr1 39969930 39970302 -
Vimu Vimu11g01858 Chr11 26265595 26268245 +
Viun Viun3g02261 Chr3 19701514 19707089 -
Vvi Vvi1g1446 Chr1 20835862 20839047 +
Vvi Vvi1g1447 Chr1 20850133 20852279 +
Lasa Lasa7g03947 Chr7 627054256 627055317 +
Pvu Pvu2g1790 Chr2 32385722 32386012 -
Vvi Vvi1g1448 Chr1 20854747 20855013 +
Vvi Vvi1g1449 Chr1 20870539 20876136 +
Bva Bva05g00043 Chr05 216454 219576 +
Gma Gma18g00069 Chr18 573106 577253 -
Lasa Lasa5g02611 Chr5 492671113 492673092 -
Mepo Mepo3g06221 Chr3 76388059 76391866 -
Mtr Mtr3g2807 Chr3 42067050 42071023 -
Phco Phco2g02972 Chr2 58557478 58561068 +
Psa Psa5g2232 Chr5 174466297 174469330 +
Pste Pste7g02397 Chr7 22727430 22730554 +
Pumo Pumo1g00447 Chr1 6135348 6138712 +
Pvu Pvu1g2694 Chr1 51592506 51596685 +
Rops Rops11g03719 Chr11 70861019 70865751 -
Seca Seca6g01691 Chr6 71364543 71368692 -
Spst Spst1g01895 Chr1 27125581 27127996 -
Sto Sto3g2659 Chr3 31056468 31059665 -
Tpr Tpr2g4676 Chr2 52078493 52082876 -
Trre Trre5g03090 Chr5 26088577 26091070 -
Tsu Tsu07g02713 Chr07 31763399 31766346 -
Vian Vian2g03178 Chr2 52252481 52254828 +
Vifa Vifa2g02452 Chr2 642687800 642690810 -
Vimu Vimu6g01517 Chr6 14317033 14319391 -
Viun Viun1g03452 Chr1 41461695 41465636 +
Vivi Vivi3g03369 Chr3 56714152 56717803 +
Vvi Vvi1g1450 Chr1 20879398 20883583 +
Adu Adu10g00686 Chr10 8207778 8211651 -
Ahy Ahy20g0968 Chr20 13855689 13860151 -
Aip Aip10g01002 Chr10 13192822 13197224 -
Arst Arst10g00877 Chr10 7855854 7860369 -
Bva Bva06g01744 Chr06 12125879 12129352 -
Bva Bva05g00044 Chr05 220269 223656 +
Dod Dod04g0612 Chr04 8814309 8820561 +
Gma Gma18g00067 Chr18 532874 536473 -
Lasa Lasa5g02609 Chr5 492664230 492667847 -
Mepo Mepo3g06220 Chr3 76380546 76384968 -
Mtr Mtr3g2806 Chr3 42060738 42064708 -
Phco Phco2g02973 Chr2 58565960 58569796 +
Psa Psa5g2233 Chr5 174471889 174475522 +
Pste Pste7g02398 Chr7 22734465 22739800 +
Pumo Pumo1g00448 Chr1 6142810 6147449 +
Pvu Pvu1g2695 Chr1 51601924 51606868 +
Rops Rops11g03718 Chr11 70850250 70858093 -
Seca Seca6g01690 Chr6 71353326 71358407 -
Spst Spst1g01894 Chr1 27118084 27122041 -
Sto Sto3g2655 Chr3 31013448 31022505 -
Tpr Tpr2g4671 Chr2 52038377 52042732 -
Trre Trre5g03088 Chr5 26056140 26060133 -
Tsu Tsu07g02712 Chr07 31756142 31760370 -
Vian Vian2g03179 Chr2 52256353 52262110 +
Vifa Vifa2g02451 Chr2 642137668 642140736 -
Vimu Vimu6g01516 Chr6 14309880 14314010 -
Viun Viun1g03453 Chr1 41468991 41473286 +
Vivi Vivi3g03370 Chr3 56723727 56727794 +