Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01889 ATGGTCCAAGTCTTAATGTCTCCAACCATGTGGATATGGAGAGGGATGTTATTGGTGATGTTCATGCTGTTTCCAGGCCAAGTATGTGCTACGAAGGAGCAAGAGCGTGCTACTGACTGTCTCCCTTCTTTCTGTGGGAAAATCGCAAACATAAGTCGCCCATTTCGATTGAAAGGTGACCCAATACATTGCGGCGACAGAAGGTACGAACTGAACTGTGAAAATAATGTTACGGTATTAAATTTGTATGGGAAAAATTATCATGTGCAGGCAATCAACTACGATAATTTCACAATCCGAGTGGTTGATCCGGGAGTTGAAGAACCAAGTTGCTCCTCCCTTCCACGCTATTTCCTGTCTCAATTCAATTTCACTGATGCTTATCTTGCTCCCGTCGTGTATCCATACCGAGCCATTCAATTCCAATTCTCTGAAGTTATTGGCTTTTACGAGAAGAGTCTTTTCAAGCACATAAGTTACTTGAATTGCAGCCATCCAGTGAGTGAGAATCATAGGTACGTGAATATTACTCCGTGTGTGAAGTGGGAGTCGAAGGGATATATGTATGCCTTCGCTGGTAACTTAACAGCAGCGAGCCTTGAAGTTGGTTGTCGTATAAAGCTGGTTTCTCCGACGTCTTGGTGGGGTTTGGACGAAAATGAATATTCCTACACTGTGATGAATACGGCGCTACGTTATGGATTTGAGATGTCGTGGTTGCATTCCGCCTGTGATGATCATTGTGGAAACTCATCTTATGGCGAGTGCTTTATGGACTCTTCCATCCTCAAGCTTCAATGCTCGCTCTCCTGCGATATATTGTCATCACTGCTAACTAACTGTGGGAAAGCGACATGGTTACAGAGGATAGCTAATGGAGCATGTAAGAATAGTGTCATCTTAATTTACTTGCGCTTTGTTTATGAGCATCATAACATGAATTGA 945 0.4307 MVQVLMSPTMWIWRGMLLVMFMLFPGQVCATKEQERATDCLPSFCGKIANISRPFRLKGDPIHCGDRRYELNCENNVTVLNLYGKNYHVQAINYDNFTIRVVDPGVEEPSCSSLPRYFLSQFNFTDAYLAPVVYPYRAIQFQFSEVIGFYEKSLFKHISYLNCSHPVSENHRYVNITPCVKWESKGYMYAFAGNLTAASLEVGCRIKLVSPTSWWGLDENEYSYTVMNTALRYGFEMSWLHSACDDHCGNSSYGECFMDSSILKLQCSLSCDILSSLLTNCGKATWLQRIANGACKNSVILIYLRFVYEHHNMN 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01889 314 Pfam Wall-associated receptor kinase galacturonan-binding 40 103 IPR025287 GO:0030247
Vimu1g01889 314 PANTHER OS01G0690200 PROTEIN 16 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01889 Vimu-Chr1 23574783 23576130 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01889 19 102 Receptor kinase-like Gene Family AT5G38260 30.588 8.35e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01889 - - vun:114195039 378.252