Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu1g0705 ATGAAGAAGCTGCTATATCAATTACCATTCACTCTTCCCAAATCGCTAAGCAGCAATGTTACTATTATCAGGTTAACATCCACGGTTTCTAATCACCCGGAAATGAAGCGCTGCAATCTCTTAATCTTCAGGCTCTGTGAGGATGGCAAAATCGACGATGCACGCAAAGTGTTTGACAAAATGCTTGATAGGGACATTGGTTTGTGGACCACAATGATAAATGGGTACTTGAAATGTGGCATGATCAGGGAAGCCAGGAAGCTGTTTGATAGACTGGATGCCAAGAAAAATGTGGTCACTTGGACAGCCATGATTAAAGGGTACATCAGACTTAACCAAGTTAAGGAAGCTGAGAGGTTGTTTTATGAGATGCCGCTGAGGAATGTTGTGTCTTGGAACACAATGGTTGATGGGTATGCAAGGAATGGCCTCACCCAGCAGGCTTTGGACTTGTTCAGGAGAATGCCGGAGAGGAATGTGGTTTCTTGGAATACAATCATTACAACTTTGGTGCAGTGTGGGAAAGTTGATGATGCACAGAGGCTTTTTGATCAGATGAAGGAAAGGGATGTGGTTTCGTGGACTACCATGGTTGCGGGTCTCTCCAAAAATGGGAGGGTTGAGGATGCTCGAGCACTCTTCGATCAGATGCCTGTTAGGAATGTGGTTTCTTGGAATGTAATGGTCACGGGATATGCACAAAATGGGAGGTTGAATGAGGCTCTGGAGTTGTTTCAGAGGATGCCTGAGAGGAATATGCCTTCTTGGAATACCATGATCACGGGTTTCATTCAGAATGGGGAGTTAAATCATGCAGAGAAGCTGTTTCGTGAAATGCGTGTGAAGAATGTCATTACTTGGACTGCAATGATGACTGGGTATGTGCAACATGGGCTAAGTGAAGAAGCAGTGAAGGTATTTAACAAAATGCTGGCTGCTGATGGGTTAAAACCCAACACTGGAACTTTTGTGACCGTTTTAGGCGCTTGTAGTGATTTAGCTGGTCTTACCGAGGGACAACAAATTCATCAAATGATAAGTAAAACAATTTTTCAGGATAGCACATATGTGGTATCAGCTCTGATAAATATGTACTCAAAATGTGGTGAGTTGCGAATTGCTAGGAAGATGTTTGATGATGGGTTATTGAGGCAAAGGGACTTGATATCTTGGAATGGTATGATTGCTGCCTATGCGCATCATGGGTATGGCAAGGAGGCAATTAATTTATTTAACGAAATGCAAGAATTAGGTGTCCCTGCTAATGATGTCACCTTTGTTGGACTTCTCACTGCTTGTAGTCATACTGGTTTAATTGAGGAAGGACTGAAATACTTTGATGAAATTCTGAAAAACAGATCAATACAACTCAGAGAAGATCACTATGCATGTTTGATTGATCTTTGTGGTCGTGCAGGTAGGCTGAAAGAAGCATTCGATATTATTGAGGGGCTTGGGGAGGAGGCTTCATTGACTGTTTGGGGAGCTCTCCTTGCTGGATGTAATGTGCATGGAAATGCTGATATTGGGAAGCTTGTAGCAGAGAAAATTTTGATAATTGAACCACAGAATGCTGGCACTTATTCATTACTTTCAAATATGTATGCTTCAGCAGGGAAATGGAAAGAAGCTGCCAATGTCAGAATGAAAATGAAGGACAGGGGGTTAAAGAAGCAGCCAGGTTGTAGTTGGATTGAAGTTGGCAATACAGTGCAAGTATTTGTAGTTGGTGATAAATCACATTCTCAATATGAGCTTCTTGGACATTTACTTGATGATATACATACAAAAATGAAGAAGGCCATGGACACGCCACATAATGACTTATTAATTAATGTGGAACTTTACTAG 1851 0.4176 MKKLLYQLPFTLPKSLSSNVTIIRLTSTVSNHPEMKRCNLLIFRLCEDGKIDDARKVFDKMLDRDIGLWTTMINGYLKCGMIREARKLFDRLDAKKNVVTWTAMIKGYIRLNQVKEAERLFYEMPLRNVVSWNTMVDGYARNGLTQQALDLFRRMPERNVVSWNTIITTLVQCGKVDDAQRLFDQMKERDVVSWTTMVAGLSKNGRVEDARALFDQMPVRNVVSWNVMVTGYAQNGRLNEALELFQRMPERNMPSWNTMITGFIQNGELNHAEKLFREMRVKNVITWTAMMTGYVQHGLSEEAVKVFNKMLAADGLKPNTGTFVTVLGACSDLAGLTEGQQIHQMISKTIFQDSTYVVSALINMYSKCGELRIARKMFDDGLLRQRDLISWNGMIAAYAHHGYGKEAINLFNEMQELGVPANDVTFVGLLTACSHTGLIEEGLKYFDEILKNRSIQLREDHYACLIDLCGRAGRLKEAFDIIEGLGEEASLTVWGALLAGCNVHGNADIGKLVAEKILIIEPQNAGTYSLLSNMYASAGKWKEAANVRMKMKDRGLKKQPGCSWIEVGNTVQVFVVGDKSHSQYELLGHLLDDIHTKMKKAMDTPHNDLLINVELY* 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu1g0705 616 SUPERFAMILY TPR-like 98 395 IPR011990 GO:0005515
Pvu1g0705 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 128 162 IPR002885 -
Pvu1g0705 616 Pfam PPR repeat 189 217 IPR002885 -
Pvu1g0705 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 524 558 IPR002885 -
Pvu1g0705 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 190 220 IPR002885 -
Pvu1g0705 616 TIGRFAM PPR: pentatricopeptide repeat domain 38 66 IPR002885 -
Pvu1g0705 616 TIGRFAM PPR: pentatricopeptide repeat domain 285 320 IPR002885 -
Pvu1g0705 616 TIGRFAM PPR: pentatricopeptide repeat domain 192 222 IPR002885 -
Pvu1g0705 616 TIGRFAM PPR: pentatricopeptide repeat domain 161 192 IPR002885 -
Pvu1g0705 616 TIGRFAM PPR: pentatricopeptide repeat domain 389 422 IPR002885 -
Pvu1g0705 616 TIGRFAM PPR: pentatricopeptide repeat domain 130 161 IPR002885 -
Pvu1g0705 616 TIGRFAM PPR: pentatricopeptide repeat domain 223 253 IPR002885 -
Pvu1g0705 616 TIGRFAM PPR: pentatricopeptide repeat domain 255 283 IPR002885 -
Pvu1g0705 616 TIGRFAM PPR: pentatricopeptide repeat domain 69 94 IPR002885 -
Pvu1g0705 616 TIGRFAM PPR: pentatricopeptide repeat domain 99 129 IPR002885 -
Pvu1g0705 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 283 318 IPR002885 -
Pvu1g0705 616 PANTHER BNAA05G08880D PROTEIN 69 592 - -
Pvu1g0705 616 Pfam PPR repeat family 96 129 IPR002885 -
Pvu1g0705 616 Pfam PPR repeat family 282 330 IPR002885 -
Pvu1g0705 616 Pfam PPR repeat family 387 434 IPR002885 -
Pvu1g0705 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 65 95 IPR002885 -
Pvu1g0705 616 PANTHER OS01G0913400 PROTEIN-RELATED 69 592 - -
Pvu1g0705 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 387 421 IPR002885 -
Pvu1g0705 616 SUPERFAMILY TPR-like 366 561 IPR011990 GO:0005515
Pvu1g0705 616 Pfam PPR repeat 358 380 IPR002885 -
Pvu1g0705 616 Pfam PPR repeat 39 66 IPR002885 -
Pvu1g0705 616 Pfam PPR repeat 69 92 IPR002885 -
Pvu1g0705 616 Pfam PPR repeat 462 483 IPR002885 -
Pvu1g0705 616 Pfam PPR repeat 130 160 IPR002885 -
Pvu1g0705 616 Pfam PPR repeat 223 252 IPR002885 -
Pvu1g0705 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 127 IPR002885 -
Pvu1g0705 616 Pfam E motif 504 566 IPR046848 -
Pvu1g0705 616 Gene3D Tetratricopeptide repeat domain 17 127 IPR011990 GO:0005515
Pvu1g0705 616 Gene3D Tetratricopeptide repeat domain 339 439 IPR011990 GO:0005515
Pvu1g0705 616 Gene3D Tetratricopeptide repeat domain 128 189 IPR011990 GO:0005515
Pvu1g0705 616 Gene3D Tetratricopeptide repeat domain 190 252 IPR011990 GO:0005515
Pvu1g0705 616 Gene3D Tetratricopeptide repeat domain 253 338 IPR011990 GO:0005515
Pvu1g0705 616 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 221 255 IPR002885 -
Pvu1g0705 616 Gene3D Tetratricopeptide repeat domain 440 581 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu1g0705 Pvu-Chr1 8911784 8913634 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu1g0705 62 612 Glycoside Hydrolase AT3G49170 31.424 2.27e-101 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu1g0705 - - gmx:100792086 1087.79