Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi3g03021 ATGGCACACTTAGATGAAATAAGAGACTCCCAAAGAGCTCGTGGTACTGCAACCATTCTAGCTATTGGAACCGCAACTCCACCAAATTGCATTTACCAATCTGATTTCACAGATTATTATTTCCGAGTTACCAACAGCAACCACATGCCTCAACTCAAGGACAAATTGACGCGTATATGTGAGAAGTCAATGATAAAGAAACGTTACATGCACTTGACAGAAGAAATGTTGAAAGAAAATCCAAACATATCAAGTTATGAGAAACCATCTCTGGACGCACGCCAGGACATTTTAGTTGAAGAAGTACCAAAGCTAGGAGAAAAAGCAGCATCAAAAGCCTTAAAAGAATGGGGAAGACCAAAATCAGAGATAACTCATCTCATATTTTGTTCAACTTCAGGTGTTGACATGCCTGGTGCTGATTATCAACTCGTCAAACTCTTAAACCTAAATCCATCCACAAAACGATTTATGTTATATCACCAAGGTTGTTTTGCTGGTGGAACTGTTCTTCGTCTTGCCAAAGATCTTGCTGAGAACAACATTGGTGCACGTGTCCTCGTTGTTTGTTCTGAATTAACCGTTGTTACTTTTCGTGGTCCAAATGAAAATCACTTGGATTCCTTAGTTGGACAAGCACTCTTTGGTGATGGTGCTTCATCTGTGATCGTTGGATCAAACCCTGATGAGAGAATTGAAAAACCGTTGTTTTATCTTGTTTCAGCATCCCAAACGATTCTACCAGATTCTGAAGGAGCGATTGAAGGACACTTGCGCGAAGTGGGATTGACATTTCATTTGAAAGAAAATGTTCCAGAATTGATCGGTGAGAATATAGTGAAAAGTCTAGAAGAAGCATTCCATCCACTTGGAATAAGTGATTGGAATTCATTGTTTTGGGTAGCACACCCTGGTGGTCCTGCAATATTGAAGAGGGTTGAAAAAACTGTTGGGTTGAATTCAGATAAACTAAATGCGACAAAACATGTTCTTAGTGAGTATGGAAACATGTCGAGTGCTTGTGTTTTATTTATATTGGATGAGATGAGAAGAAGTTCTACGAAGGAAGGGAAGTTGACTACCGGTGAAGGACTTAAATGGGGTGTTTTGTTTGGATTTGGTCCTGGCTTGACCATGGAAACCATTGTTTTGCATAGCGCAGCTACCAACATATAG 1176 0.3988 MAHLDEIRDSQRARGTATILAIGTATPPNCIYQSDFTDYYFRVTNSNHMPQLKDKLTRICEKSMIKKRYMHLTEEMLKENPNISSYEKPSLDARQDILVEEVPKLGEKAASKALKEWGRPKSEITHLIFCSTSGVDMPGADYQLVKLLNLNPSTKRFMLYHQGCFAGGTVLRLAKDLAENNIGARVLVVCSELTVVTFRGPNENHLDSLVGQALFGDGASSVIVGSNPDERIEKPLFYLVSASQTILPDSEGAIEGHLREVGLTFHLKENVPELIGENIVKSLEEAFHPLGISDWNSLFWVAHPGGPAILKRVEKTVGLNSDKLNATKHVLSEYGNMSSACVLFILDEMRRSSTKEGKLTTGEGLKWGVLFGFGPGLTMETIVLHSAATNI 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi3g03021 391 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 5 387 IPR011141 GO:0009058|GO:0016747
Vivi3g03021 391 CDD CHS_like 16 384 - -
Vivi3g03021 391 PIRSF PKS_III 2 389 IPR011141 GO:0009058|GO:0016747
Vivi3g03021 391 Gene3D - 236 390 IPR016039 GO:0016746
Vivi3g03021 391 Gene3D - 1 235 IPR016039 GO:0016746
Vivi3g03021 391 FunFam Chalcone synthase 1 236 388 - -
Vivi3g03021 391 Pfam Chalcone and stilbene synthases, C-terminal domain 239 386 IPR012328 -
Vivi3g03021 391 ProSitePatterns Chalcone and stilbene synthases active site. 156 172 IPR018088 GO:0009058|GO:0016746
Vivi3g03021 391 FunFam Chalcone synthase 2 1 235 - -
Vivi3g03021 391 SUPERFAMILY Thiolase-like 1 233 IPR016039 GO:0016746
Vivi3g03021 391 Pfam Chalcone and stilbene synthases, N-terminal domain 5 228 IPR001099 -
Vivi3g03021 391 SUPERFAMILY Thiolase-like 235 385 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi3g03021 Vivi-Chr3 51187580 51189263 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi3g03021 138 383 Miscellaneous Gene Families AT3G52160 23.438 3.84e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi3g03021 K00660 - nnu:104591893 611.298