Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo13g2102 ATGCACAGACCAAAAAGCTTCTTCGTCTTTCACCGACTCATTCTTCTCCACTTCCTTCTCACACTCACCCCGTCTTGTGGCGCTTCTGGCGGCGGCGGGGGCATTCCGCCGCAGGAGCTCTGGTGCGTGGCGAAAAACAACGCGGAGGACTCGGATCTGATGACGGCGCTGAATTGGGCCTGTGGGCCTGGTGGGGCCGACTGCAGCCCAATCCAAAATGGAGGACCATGCTACGACCCAAGCAATACTCCGCTTATGGCTTCCTATGCTTTCAACGATTACTTCCTGAAGCATGGCTTGACCGATGATAGCTGCAGTTTCAGTAACACCGCTGCTGTTATTTCTTTGAACCCTAGTACTGATAAATGCAAGTTTCCTTCCAGTTTAAGTGTGAGCAATGGAGGTGTTACCGGAACAATGTCGTCGACGTCATCCTCGTCATCATCATCAGTGGGATTGGGACCCAGTGAGGATATGAGTGGAGGCAACAAAGTTTCTTTGAGGTGGTGGTTTTGGCTTTTGAGTATATCACATTTGCTGCTCATGGTTTCAGTTTTTGGATAG 564 0.5071 MHRPKSFFVFHRLILLHFLLTLTPSCGASGGGGGIPPQELWCVAKNNAEDSDLMTALNWACGPGGADCSPIQNGGPCYDPSNTPLMASYAFNDYFLKHGLTDDSCSFSNTAAVISLNPSTDKCKFPSSLSVSNGGVTGTMSSTSSSSSSSVGLGPSEDMSGGNKVSLRWWFWLLSISHLLLMVSVFG* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo13g2102 187 SMART X8_cls 40 125 IPR012946 -
Amo13g2102 187 Gene3D - 37 135 - -
Amo13g2102 187 Pfam X8 domain 40 111 IPR012946 -
Amo13g2102 187 PANTHER BETA-1,3 GLUCANASE 27 144 - -
Amo13g2102 187 PANTHER BETA-1,3 GLUCANASE 27 144 IPR044788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo13g2102 Amo-Chr13 33429247 33430830 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo13g2102 38 153 Glycoside Hydrolase AT1G66250 36.207 1.81e-22 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo13g2102 - - adu:107478056 307.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo13g2102 13 33429247 33430830 Amo13g2102 13 33429247 33430830 ECH