Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g01124 ATGAGTAGAATATCTGTGATTTCCTCCCAAGCATTTCTCTTGAGGCTTCACTTTCGGCAACAAAGAAGTTTCATCTCTTCCATGTCTCTCTCAGATAGCGATGATGAAATGGAAATGGATTTTCTTCGTGATCGGTACCATGAAAAGGACGGCGGAAACTTTGAAGTGTTTCTGAGTTTCAGAGGGGAAGATACGCGTGCTTCTTTCATTTCGCATCTCTACACGGCTCTTCAGAATGCAGGAATCTTTGTTTTCAAGGATGACGAGTCACTTCCACGGGGAAAGCAAATTTCACCCTCTTTGCGGCTAGCGATCGAAGAGTCTCGAATTTCTATTGTTGTTTTCTCAAAAAATTATGCAGAATCGTGGTGGTGTTTGAAAGAGTTGGAGAAAATAATGGAGTGTCACAGAACCATAGGGAATGTGGTACTACCAGTGTTTTACGACGTTGACCCCTCTGAAGTACGTCATCAAAGAGGCGACTTTGGGAAAGCATTTCAACGTCTTTTGAGCAAGTTTTCGAAAGAGGAAGTGAAAAATCAGAATTGGTGGTGGAAGCCTCCTCGTGAGATTGGTGGCATCACAGCGGTATACCAACTCGAGGACCATTGGAAAGAGGCACTTCTTGAGGTTGTTCAGATCTCAAAGATTTTGGACTTAAATCCAAGGGGGAAAATGAAGATTGCTGAAAGTATAGAGATCCTCGTGGGGCGGTGGATGGCGGGAATTTTTAAAGGTGCTGGAATCCCATTTAGAAAAGAGAAGGTTAATGATGCCATGGACTTCGTCTGGAAGCAATGGAGGGAGGTATTTTGTGAGGCTGTTAACATCTCAGAGGTTGCATTACTAGATCCATGGTAA 861 0.4344 MSRISVISSQAFLLRLHFRQQRSFISSMSLSDSDDEMEMDFLRDRYHEKDGGNFEVFLSFRGEDTRASFISHLYTALQNAGIFVFKDDESLPRGKQISPSLRLAIEESRISIVVFSKNYAESWWCLKELEKIMECHRTIGNVVLPVFYDVDPSEVRHQRGDFGKAFQRLLSKFSKEEVKNQNWWWKPPREIGGITAVYQLEDHWKEALLEVVQISKILDLNPRGKMKIAESIEILVGRWMAGIFKGAGIPFRKEKVNDAMDFVWKQWREVFCEAVNISEVALLDPW 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g01124 286 PANTHER TMV RESISTANCE PROTEIN N-LIKE 44 216 - -
Vimu9g01124 286 Pfam TIR domain 54 183 IPR000157 GO:0007165
Vimu9g01124 286 Gene3D - 52 244 IPR035897 -
Vimu9g01124 286 ProSiteProfiles TIR domain profile. 52 202 IPR000157 GO:0007165
Vimu9g01124 286 SUPERFAMILY Toll/Interleukin receptor TIR domain 50 186 IPR035897 -
Vimu9g01124 286 SMART till_3 53 214 IPR000157 GO:0007165
Vimu9g01124 286 FunFam Disease resistance protein (TIR-NBS-LRR class) 52 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g01124 Vimu-Chr9 18653904 18655093 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g01124 56 190 Miscellaneous Gene Families AT1G57830 40.741 3.99e-24 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g01124 - - vum:124833113 426.402