Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0553 ATGGATTATAAGAACAATGACGATGGTGCTAGGGAGCCATGGGATTGGCAAGGGGAGAATTATTGTCTCAAAAAGACTTCTGATTTTGAAATTTCAGAAGAGCTGTGGAATGATGTGCCTCAAAATGAAGAAGATCTTTCATACATGTTTGACGATGAAACAACCCCAGTTAAGGCTTGTGGTGATTTGGCATATAATGTCACTAATGGTGattcaaataatatacaaaaggAACTAGAGGAATGTAGGGAGACTTCTTCACAAGTCAAGAGGCGGCGGATGCTACAGTTCAACAGTCAAGATAGGGATCAATCTCTATCCAATGAAGACATGTCTTTGCCATATTTGAAAAATGGGAAGGAGGACCCAACTAAGGATATTTTTCCGGAAGTATCGCAATGGGTGTCGGGGGCATCAGGAAATGCATCTGCATCTGGTTATGTGGACCTTGAATCAAGTGAAACGTGGCTTGCAGAATACTTTAATGATGCTGAGATGGATATCAGTCCTGACGAATTGAATTTTTCAGGGGCAGATGATGTTCAAATTGATGTTGCAGAGCTTAATGCCATCACACCATCACATGAACAAAATGCAGTTCAAAAGCATGTCCCTCGAACCTCCAGAAATATTATCTTCAAAGGTAGGAAATCTTTTATACATACGCCCACAAAGTTGCCTTCTTCCGTGGCCTATCCATTTGCCTTCATTAAACCCAGTGGTGCCCATGGAGATGTAACGCTGAAGGAAATAAATCAGCGCATTCGAACACCGCCTCCTTCGAAATCAAAGCAAAGCATTGATGATCCAGCTGCTTACCCCAAGTCAGCCTTCTCAGGGAAGCCTGTGGTTGGTAAAACGAAAATTCGCACCGAAGGGGGAAAAGGTTCCATTGATAGCGATCTCAGTGTTAAGGGTTTGGGAGAAGTGAAAGATGAAGTATGTGGAAGAAGCGGTAAATTTCTACCACTTCAAACTAACAATGGTATTCTGAAAATGGTTGTgaagaataaaaattgtatgTATATTCATATTCATGTGACAAGAATTAGAAGTTCGTTTTGGCTACAACCTGTTAATGTGAATGAAATAACTAATGAACCTGTTAATGAACTTGCTAATGAACTCGTGAATGATCATGTAACTGAAAGTGTGCATAGGTGTGTGGATGTACCTGTTACTGAACATGTGAATGATTCTATAAATGATTGTGTGAATGAACATGTTACTAAAGTTGTTGGTGCTGTGGATGGTAATGGAGAAGTACCTATAAATGAAGAGTTCCCATAG 1290 0.3946 MDYKNNDDGAREPWDWQGENYCLKKTSDFEISEELWNDVPQNEEDLSYMFDDETTPVKACGDLAYNVTNGDSNNIQKELEECRETSSQVKRRRMLQFNSQDRDQSLSNEDMSLPYLKNGKEDPTKDIFPEVSQWVSGASGNASASGYVDLESSETWLAEYFNDAEMDISPDELNFSGADDVQIDVAELNAITPSHEQNAVQKHVPRTSRNIIFKGRKSFIHTPTKLPSSVAYPFAFIKPSGAHGDVTLKEINQRIRTPPPSKSKQSIDDPAAYPKSAFSGKPVVGKTKIRTEGGKGSIDSDLSVKGLGEVKDEVCGRSGKFLPLQTNNGILKMVVKNKNCMYIHIHVTRIRSSFWLQPVNVNEITNEPVNELANELVNDHVTESVHRCVDVPVTEHVNDSINDCVNEHVTKVVGAVDGNGEVPINEEFP 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0553 429 Coils Coil 72 92 - -
Ssu2g0553 429 MobiDBLite consensus disorder prediction 255 275 - -
Ssu2g0553 429 MobiDBLite consensus disorder prediction 96 122 - -
Ssu2g0553 429 PANTHER INDUCED TRANSCRIPT PROTEIN, PUTATIVE-RELATED 1 298 - -
Ssu2g0553 429 PANTHER PROTEIN XRI1 1 298 IPR039933 GO:0007140|GO:0007143
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0553 Ssu-Chr2 32078726 32089358 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0553 - - vra:106773733 496.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu3g1417 3 36504385 36507989 Ssu2g0553 2 32078726 32089358 PCT