Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2544 ATGCCTACGTCCGTTGGAGTAGCCAGGCAATGCTTGACTTCCGACGCAGCTCACGCCCTCGACGAGGCCGTTGCCGTCGCTCGCCGTCGTGGCCACGCTCAGACCACCTCGCTCCATGCCGTCTCCGCCCTCCTCTCGCTGCCCTCTTCAATCCTACGCGACGCCTGCGCGCGTGCTCGCAACTCTTCCTACTCCACTCGCCTTCAATTCAAGGCGCTAGAGCTCTGCCTCAGCGTGTCTCTGGACCGGGTTCCCTCCACCCAACTCTCCGAAGACCCGCCCGTGTCGAACTCGCTCATGGCCGCCATTAAGCGTTCTCAGGCCAACCAGAGAAGACAACCCGAGAATTTCCATCACTACCATCAAATCTCTCAGCAGCCATCTTCGGTTTCGTGCGTCAAAGTGGAGCTTCAGCACTTAATACTGTCCATACTCGATGACCCGGTTGTGAGCCGGGTGTTTGGAGAAGCGGGTTTCCGGAGCTCCGAAATCAAGCTCGCAATTCTCCGCCCTCTCCCACAGCTCCTCCGCTACTCCCGCTCCCGAGGTCCCCCTGTATTCCTCTGCAACCTGACGGATCATTCGGACCCGGGTCGTCGGAGCTTCCCGTTTTCCAGGTCGTTAGAGTTCTGCGACGGGGACGAGAACTATCGAAGAATCGGGGAGGTGCTTTCAAGAAGCAGCGGAAGGAATCCCCTGCTTCTTGGTGCATGCGCGTATGATGCTCTGAAAAGTTTCACAGAAGCTGTGGATAAACGAAAGGATGGGGTTTTGCCTGTGGAATTATGTGGGTTGCATGTGATATGCATTGGAAAAGACGTTTCCAAGTTTATAACAGAGAATTTGGATCCCGAGGCTATGAGCTCCAAGTTGAAGAAAATATCCCAAATGGTAGAACAGTGTGTAGGACCTGGTTTGTTGGTGAATTTGGGAGACTTGAAGTGTTTCGTTGAGGAGAATGGTTCAGGTGAAGCAATGAGCTTTATAGTTGCCGAATTGGGAAAGTTGTTAGCACTTAATTATGACAAGTTTTGGTTAATGGCTTCGGCTGGGAGCTACGATAGCTATTTGAAATTTGTGGGTAAATTTCCATCCATCGAGAAAGATTGGGATTTGCAACTTCTGCCTATTACTTCTGTTAGACCTTGCATGGCCGAATCATATCAGAAACCCAGATCAAGCTTCATGGATTCATTTGTCCCATTTGGTGGCTTCTTTTCTTCACCTTGTGAGTTAAAAGGTCCACTAAGTGGCTCCTATTATTGTGTTCCCCACTGCCATCAATGTGGGAAGAGGTTTGAACAAGAAGAGTTTTCTGCTTCACCTGCTGCATCTTGCCAATCTAAGTTACTTCCCTTGTTGCACACTCCTGAGCCTGCCTCAGCAAAAGTATTGAATGTAAAGACCAAAGATGATGGTGTTGTGGTGGACACTAGTGAACCCGGGCCACATAAGAAATTGGACAAGACAAGCCATCTCCATACTCAACAACTCCCTGATGCAAATACTTGTCAAACTGTTGTGGGGTTTGAATGTTTCAACAACAAAAAGGAAGATGATGCATCACCAACTGAAAACATTGACCTCAACTCACAAGTGCCCGGTGTTGACCTAATGATTTCTTCATCAGAATCAACAAGCCCATTTTCTGATGCTTACAAGTCAAAGCAGGAGAAATTCACTTCAGGACTCTCAGAGATGTTCAGCAAACCAGAAGACATGGAGTCAGCTGAATTATGCAACATGTCCAATTCAAGTGTGTGTGATGGTAATCAAATGTCTTCCGCATCTGTGACTTCTGTGACCACAGACCTAGGCTTAGGATTAGGCTCTTCTCGTACCACCAACACATCTAAGAAAGCTACAGGCGAGCAGAAAATATCGAACTCCGATCGGGTTAATGGAAACAATTTTCAGCATCCAGCCCTGTCTTCATCCTGCTTAAGTTTTGACTATGGAGGGCAAGTTGATCTAAGAAATTTCAAAGTTCTTTTTGAAGCTCTCTCCAAAAAGGTTGGCTGGCAGGAAGAGGCCCTGCATGTTATAATTAGAACACTGTCTTGTTGCCGAAGAAAAAGGGGAAAACACCACAGAGAAAATCAAAGAGGAGACATATGGATGAATTTTGTAGGGCCTGATAGGCATGGTAAGAAGAAAATTGCTGTTTCTTTGGCTGAGTTTTTGTGTGGAAGCCGAGATAGCTTCGTTTTCGTGGATCTAAATTCAGAAGAAATGAAAGGGTATGATGTCAAACTCAGAGGGAAGACTACTCTTGATTTTATAGTTGGAGAATTGTGCAAGAAACCGTTGTGTGTGGTCTTCCTTGAAAATGTAGACAAGGCTGACATGCTGGCTCAAAATAGTTTGTCTCAAGCCATCAAGACTGGAAAAATTACCGATTCACATGGAAGAGAAGTTGGTGTAAACAATTCAATATTCGTGACATCCTTTTGTATTCACCAAAATAGCAGCACACCGACCAGGGAACGTTCCAACTACACAGAGGAAAGAATACTAAGGACAAAAGGAGGGGGAATCAAGATAAAAGTTGAACATGTGATTGGAGACATCAGAAGCCAAAGCGTTACAGTTGTTAAAAATTCAATACAAGGCATTCCCAATCTAGTTTTCATAAACAAAAGAAAGCTGATTGGTGATAACAATGAATCTCAGGATCAGCACAAAATCTCAGACACTGCTAAAAGGGCTCACATGGCATCAAactgggttttggatttgaatcTTACAGCTGAACAGAATGAACTGCAACACATGGACAATGGAAACCATGAACATGTCTCAAATGAGAGCCAAAACCAAAACCACAACCTCTGGTTCCAACATTTTTATGACCAGGTTGATGAAACAGTTGTTTTCAAACCTTATAATTTCGACGCGGTTGCAGATAGAGTGCTGAAAGTGATCAGAAGGAAGTTCCACAAAATTGTTGGATCCGAGTGTGCACTACAGATCGAATCAGAGGTCATGGAACAACTACTGGCGGCTGCATATGTCTCGGAGAGGGACACGGAGGTGGAGGATTGGGTAGAGCAAGTTCTGAGTGGAGGATTTGCAGAAGTACAGAGAAGGTACAAGCTAAGTGCTCCTTTTGTTGTGAAACTTGGTACTTGTCAGGACCAAGCCTCAGGACTATACCTTCCACCCAAAATACTTGTAGACTAA 3183 0.4552 MPTSVGVARQCLTSDAAHALDEAVAVARRRGHAQTTSLHAVSALLSLPSSILRDACARARNSSYSTRLQFKALELCLSVSLDRVPSTQLSEDPPVSNSLMAAIKRSQANQRRQPENFHHYHQISQQPSSVSCVKVELQHLILSILDDPVVSRVFGEAGFRSSEIKLAILRPLPQLLRYSRSRGPPVFLCNLTDHSDPGRRSFPFSRSLEFCDGDENYRRIGEVLSRSSGRNPLLLGACAYDALKSFTEAVDKRKDGVLPVELCGLHVICIGKDVSKFITENLDPEAMSSKLKKISQMVEQCVGPGLLVNLGDLKCFVEENGSGEAMSFIVAELGKLLALNYDKFWLMASAGSYDSYLKFVGKFPSIEKDWDLQLLPITSVRPCMAESYQKPRSSFMDSFVPFGGFFSSPCELKGPLSGSYYCVPHCHQCGKRFEQEEFSASPAASCQSKLLPLLHTPEPASAKVLNVKTKDDGVVVDTSEPGPHKKLDKTSHLHTQQLPDANTCQTVVGFECFNNKKEDDASPTENIDLNSQVPGVDLMISSSESTSPFSDAYKSKQEKFTSGLSEMFSKPEDMESAELCNMSNSSVCDGNQMSSASVTSVTTDLGLGLGSSRTTNTSKKATGEQKISNSDRVNGNNFQHPALSSSCLSFDYGGQVDLRNFKVLFEALSKKVGWQEEALHVIIRTLSCCRRKRGKHHRENQRGDIWMNFVGPDRHGKKKIAVSLAEFLCGSRDSFVFVDLNSEEMKGYDVKLRGKTTLDFIVGELCKKPLCVVFLENVDKADMLAQNSLSQAIKTGKITDSHGREVGVNNSIFVTSFCIHQNSSTPTRERSNYTEERILRTKGGGIKIKVEHVIGDIRSQSVTVVKNSIQGIPNLVFINKRKLIGDNNESQDQHKISDTAKRAHMASNWVLDLNLTAEQNELQHMDNGNHEHVSNESQNQNHNLWFQHFYDQVDETVVFKPYNFDAVADRVLKVIRRKFHKIVGSECALQIESEVMEQLLAAAYVSERDTEVEDWVEQVLSGGFAEVQRRYKLSAPFVVKLGTCQDQASGLYLPPKILVD 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2544 1060 Gene3D - 10 170 IPR036628 -
Sto9g2544 1060 MobiDBLite consensus disorder prediction 609 635 - -
Sto9g2544 1060 Pfam Clp amino terminal domain, pathogenicity island component 23 54 IPR004176 -
Sto9g2544 1060 Pfam Clp amino terminal domain, pathogenicity island component 135 169 IPR004176 -
Sto9g2544 1060 CDD AAA 716 816 - -
Sto9g2544 1060 ProSiteProfiles Clp repeat (R) domain profile. 8 174 IPR004176 -
Sto9g2544 1060 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 1059 - -
Sto9g2544 1060 Gene3D - 654 860 IPR027417 -
Sto9g2544 1060 PANTHER PROTEIN SMAX1-LIKE 8 1 1059 - -
Sto9g2544 1060 SUPERFAMILY Double Clp-N motif 12 116 IPR036628 -
Sto9g2544 1060 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 663 816 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2544 Sto-Chr9 28046176 28050551 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2544 - - ccaj:109805913 1280
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2544 9 28046176 28050551 Sto5g1501 5 10384378 10389421 ECH
Sto8g1119 8 7083430 7086430 Sto9g2544 9 28046176 28050551 ECH
Sto13g3014 13 34913968 34917301 Sto9g2544 9 28046176 28050551 ECH
Sto9g2166 9 25361680 25366821 Sto9g2544 9 28046176 28050551 ECH
Sto5g4333 5 52026487 52030501 Sto9g2544 9 28046176 28050551 ECH
Sto9g2544 9 28046176 28050551 Sto9g2544 9 28046176 28050551 ECH