Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sto5g1501 | ATGCCTACGCCGGTCGGGGTAGCTAGGCAGTGCTTGACACCGGACGCAGCTCGCGCTCTCGACGAGGCCGTCTCCGTCGCGCGCCGCCGCGGCCACGCTCAGACCACCTCGCTCCACGCCGTCTCCGCCCTGCTCTCGCCGCCGTCGTCCATACTACGCGACGCCTGCGCGCGTGCGCGCAACTCCGCCTACTCGCCTCGCCTTCAATTCAAAGCGCTAGAGCTATGCCTAAGCGTCTCCCTCGACCGGGTCCCCTCGACCCAGCTCGCGGACGACCCGCCCGTTTCGAACTCGCTCATGGCCGCCATTAAGCGCTCGCAGGCGAACCAGAGAAGGCAGCCGGAGAATTTCAATCTCTACCATCAAATCTCGCAGCAGCCAACTTCGGTCTCGTGCGTGAAGGTGGAGCTTCAGCATTTGGTACTATCGATTCTCGACGACCCGGTTGTGAGTCGCGTCTTCGGAGAAGCGGGTTTCCGGAGCTCCGAAGTAAAGCTCGCGATTCTTCGTCCGTTACCGCACCTCCTCAGGTACTCTCGCTCCAGAGGCCCCCCTATATTCCTCTGCAACTTGACGGAGCATCCGGACCCGGGTCGTCGGAGCTTCACTTTCCCCTTCGGCGGGACCCCGGAAGCCTGCGACGACGGCGACGAGAACTTCAGGAGAATCGGGGATGTGCTTCGCAGGAGCAGAGGGAGGAATCCTCTGCTTCTGGGTGTATGTGCTTATGATGCTCTTCAGAGTTTCACAGAAGCTGTGGATAAACGAAGAGATGGGGTTTTGCCTATGGAGTTAAGTGGATTGCGTGTGGTATGTATAGGAAAAGATGTTTCCAAGTTTGTGTTTGAGAATGGTAATAGTGAGAGTATGCGTTTGAGGTTTAAGGAGATTGCTGGaatggtggaagaagaagagtgtGTGGTGGTGAATTTTGGGGATTTGAAGTGTTTTGTTGATGAGAAAGCTTCAGGTGAAGCAGTGGGTTTTGTTATTTCTCAATTGGTGAAGTTGTTGGAAGTTAATTATGGTAAGTTTTGGGTGATGGGTGCTGCTGCGAGCTATGAGACTTATCTGAAATTTGTGGGTAAGTTTCCATCTATTGAGAAGGATTGGGATTTGCAGCTTCTTCCCATCACTTCTATTCGACCTCAGGGTGAATCATATCAGAGGCCTAAGTCTAGCTTAATGGATTCTTTTGTCCCATTTGGTGGCTTCTTTTCTTCACCCTCAGACGTAAAAGGTCCACTAAATGGATCGTATTACTGCATTCCCTACTGTCATCAATGTAGTGAAAGGTGTGAACATGAAGTGCTTCCTACTTCAAAGGAAGGATTTTCTTCTTTGGCTGCTGATCCGTACCTATCTAACTTACCTCCATGGTTGCAACGTGCTGAGCTTCGCACAACCAATGGGTTGAACTCCAAGACCAAAGATGACAGTGCTGTGCTAGATACCAGTGAATCTGGGCCGCTTAAGAAATTGGACAAGACATACCAGCATCTTCATTGTACTCAGAAATCTCCAAAAGATGTGAGTTCTCAACATTCTGATGACAAAAAGGAAGAGGTTGACAACTACAGTAGCAAAATTGCAGATGCATCACCAAGAGAATGCATCAATCTCAATTCATGCATGCCCATTGACGAGCACATGACTTCTACATCACAATCAAGCTGTCCGTTTCCCGTGGTTTCTAAGGAAAAGCCGGAGAAATATACTTCTAAAGGTTTTGAGATATTCCGGAAAGTGGAAGATCCTGAGTCGGGTGACCTACGGTCGTGGAACATGTCCAATTCGAGTGTGTGTGATGGTAGCCAACTATCTCCCACATCTGTGACTTCTGTAACCACTGATTTAGGTATAGGAATTTGCTCCTCTCCTACTAGCAACAAATCTAGAAAGCCCACAGGCCAACATACTATGGAGCATCCGAAGGATATCTTTAAGCATCCAGCCCAGTCTTCATCTTGCTTAAGTTCGGACCATTCTGGACAGTACGATATAAGAAATCCGAAAATTCTTTTTGAAGCTCTTGCTAGAAAGGTTAGCTGGCAAGATGAAGCCTTACACAACATCATAAACACAATAACTTACTGTGAAACTAAAAGGGGTAAACGCCTAGGAGCGAATCAACCAGGGGGCATATGGATGAATTTTGTGGGATCTGATAGGCTTGGTAAAAAGAAGGTTGCTGTTTCTCTGGCTGAGATTTTGTATGGAAGCCCAGAAAGCTTTACTTTTGTGGACATGAATTCTGAAGAAATAAAGGGATATGATGTGAAATTCAGAGGGAAGACTATCATTGATTTTTTAGTGGGGGAGTTGTGCAAAAATCCCTTGTCTGTGGTTTTCCTTGAAAATGTAGACAAGGTTGATATGTTGGCACAAAAAAGTTTATCTCAAGCTATTGAGACTGGAAAAATTACAGACTCACATGGAAGAGAAGTTGGTGTAAACAATGCAATAATTGTGACATCTTTCACAGTTCAACACAATAATAATTGCATGCCAATGAAGGAATTCTCCAGCTATTCTGAGGAAAGAATATTAAGGACAAAACGAGTACCCATCAAGATAAAAGTCGAACATGTTAAAAGAAAGCTGAGCAGTAGTGACAGCGGCTTCCATGATCAGCACAAAATCCCCGAAACGACGAAACGGGCTCATAAAACCTCAACTTGGCTTTTAGATTTGAATCTTCCGGCTCAAGAAAACGAACAGCAACAACACACAGATAACGGAAACTCCGAAGACATCTCGACCAACACCCAGAACCTCTGGCTGCAAGATTTGGACAAACAGGTTGACGAAACTGTCATTTTCAAACCGTTTGATTTCGATGCACTCGCGGATAGAGTGTTAAAAATGATCAGAGAGAGCTTCCACAGAATTCTTGGATCTGAGTGTTCACTCCAAATAGAGTCAGAAGTCTTGGAACAGTTACTTGCAGCTGCATATGTCTCAGAAGGGGACATGGAAGTAAAGGATTGGGTGGAGCAAGTTCTGAGTAGAGGATTTACAGAGATACAGAGAAGGTACAGCCTCACTGTTAGATCTAATGTGAAACTTTCTACATGTCAAGATCAAGCTCCAAGTGTAAACCTTCTTCCCCAAAGGGTTAAAGCTGTGTATATTATGTAA | 3141 | 0.4607 | MPTPVGVARQCLTPDAARALDEAVSVARRRGHAQTTSLHAVSALLSPPSSILRDACARARNSAYSPRLQFKALELCLSVSLDRVPSTQLADDPPVSNSLMAAIKRSQANQRRQPENFNLYHQISQQPTSVSCVKVELQHLVLSILDDPVVSRVFGEAGFRSSEVKLAILRPLPHLLRYSRSRGPPIFLCNLTEHPDPGRRSFTFPFGGTPEACDDGDENFRRIGDVLRRSRGRNPLLLGVCAYDALQSFTEAVDKRRDGVLPMELSGLRVVCIGKDVSKFVFENGNSESMRLRFKEIAGMVEEEECVVVNFGDLKCFVDEKASGEAVGFVISQLVKLLEVNYGKFWVMGAAASYETYLKFVGKFPSIEKDWDLQLLPITSIRPQGESYQRPKSSLMDSFVPFGGFFSSPSDVKGPLNGSYYCIPYCHQCSERCEHEVLPTSKEGFSSLAADPYLSNLPPWLQRAELRTTNGLNSKTKDDSAVLDTSESGPLKKLDKTYQHLHCTQKSPKDVSSQHSDDKKEEVDNYSSKIADASPRECINLNSCMPIDEHMTSTSQSSCPFPVVSKEKPEKYTSKGFEIFRKVEDPESGDLRSWNMSNSSVCDGSQLSPTSVTSVTTDLGIGICSSPTSNKSRKPTGQHTMEHPKDIFKHPAQSSSCLSSDHSGQYDIRNPKILFEALARKVSWQDEALHNIINTITYCETKRGKRLGANQPGGIWMNFVGSDRLGKKKVAVSLAEILYGSPESFTFVDMNSEEIKGYDVKFRGKTIIDFLVGELCKNPLSVVFLENVDKVDMLAQKSLSQAIETGKITDSHGREVGVNNAIIVTSFTVQHNNNCMPMKEFSSYSEERILRTKRVPIKIKVEHVKRKLSSSDSGFHDQHKIPETTKRAHKTSTWLLDLNLPAQENEQQQHTDNGNSEDISTNTQNLWLQDLDKQVDETVIFKPFDFDALADRVLKMIRESFHRILGSECSLQIESEVLEQLLAAAYVSEGDMEVKDWVEQVLSRGFTEIQRRYSLTVRSNVKLSTCQDQAPSVNLLPQRVKAVYIM | 1046 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sto5g1501 | 1046 | MobiDBLite | consensus disorder prediction | 502 | 529 | - | - | |
| Sto5g1501 | 1046 | PANTHER | PROTEIN SMAX1-LIKE 8 | 1 | 1025 | - | - | |
| Sto5g1501 | 1046 | Gene3D | - | 10 | 170 | IPR036628 | - | |
| Sto5g1501 | 1046 | Gene3D | - | 646 | 895 | IPR027417 | - | |
| Sto5g1501 | 1046 | ProSiteProfiles | Clp repeat (R) domain profile. | 8 | 174 | IPR004176 | - | |
| Sto5g1501 | 1046 | PANTHER | CHAPERONE PROTEIN CLPD, CHLOROPLASTIC | 1 | 1025 | - | - | |
| Sto5g1501 | 1046 | MobiDBLite | consensus disorder prediction | 624 | 643 | - | - | |
| Sto5g1501 | 1046 | CDD | AAA | 726 | 826 | - | - | |
| Sto5g1501 | 1046 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 671 | 990 | IPR027417 | - | |
| Sto5g1501 | 1046 | SUPERFAMILY | Double Clp-N motif | 12 | 115 | IPR036628 | - | |
| Sto5g1501 | 1046 | MobiDBLite | consensus disorder prediction | 511 | 527 | - | - | |
| Sto5g1501 | 1046 | Pfam | Clp amino terminal domain, pathogenicity island component | 135 | 169 | IPR004176 | - | |
| Sto5g1501 | 1046 | Pfam | Clp amino terminal domain, pathogenicity island component | 23 | 54 | IPR004176 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sto5g1501 | Sto-Chr5 | 10384378 | 10389421 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sto5g1501 | - | - | gmx:100786125 | 1280 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Sto5g1501 | 5 | 10384378 | 10389421 | Sto5g1501 | 5 | 10384378 | 10389421 | CCT | |
| Sto9g2544 | 9 | 28046176 | 28050551 | Sto5g1501 | 5 | 10384378 | 10389421 | ECH | |
| Sto8g1119 | 8 | 7083430 | 7086430 | Sto5g1501 | 5 | 10384378 | 10389421 | ECH | |
| Sto13g3014 | 13 | 34913968 | 34917301 | Sto5g1501 | 5 | 10384378 | 10389421 | ECH | |
| Sto9g2166 | 9 | 25361680 | 25366821 | Sto5g1501 | 5 | 10384378 | 10389421 | ECH | |
| Sto5g4333 | 5 | 52026487 | 52030501 | Sto5g1501 | 5 | 10384378 | 10389421 | ECH | |
| Sto5g1501 | 5 | 10384378 | 10389421 | Sto5g1501 | 5 | 10384378 | 10389421 | ECH |