Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto9g2166 ATGCCGACGCCGGTCAGCGCAGCGAGGCAATGCTTGACGGAGGAGGCGGCGCGTGCTCTCGACGACGCAGTGGCGGTTGCTCGCCGGCGAAGCCATGCGCAGACTACTTCGCTTCATGCTGTCTCTGCCTTGCTCGCCTTGCCTTCTTCTACGCTCCGTGAGGCTTGCACGCGCGCGCGTAGCTGCTCCTACTCCCCGCGCCTCCAGTTCCGTGCGCTGGAGCTCTCCGTAGGTGTGTCTCTGGACCGATTGCCTACCTCCAAGGCGCTTGAGGATGACCCTCCCATAGCCAATTCGCTCATGGCCGCCATCAAGCGATCCCAAGCGAACCAGAGGAGGCATCCGGAGAGCTTCCATTTGCTTCAGATGCAGAcccagcagcagcagcagcaagcGGCGTCGTTTTTGAAGGTGGAGCTCAAGCATTTCATCCTATCGATCCTCGACGATCCGATTGTGAGTAGAGTCTTCGGCGAAGCAGGGTTTCGAAGCTGCGATATCAAGCTCGCGTTGCTTCAACCGCCTTTCTCGCAAGCCTCTCGATTCTCTCGGAGCCGTTACCCGCCTCCGATGTTCCTGTGCAATCTCACGGGTAATTCCGAGATGCTTCGTCCGAGTTTCAACTTCCCTTTCGTGAGCAATCATGGGCACGAAGAAGCGGATGAGAATTGTAGAAGAATTGCGGAGGTTCTTGTGAGGACGACACAGAGAAATCCCTTGTTGGTAGGTGTTTACGCGAAGGGCGTTCTTCGGAGTTTCACAGAGACGGTACAGAGAGGTCGAGTGGGTGGTGGTACTACGTTGCCAGTTGAAATAGCTGAGATTAATGTAATCTGCATTGAGAAGGAGATTGCTGAATTCTTCGTTGAAGGTGGAAGCGAAGAGAAGATGGGGTTGAAACTTGAAGATTTGAGTCGTGCTGTTGAGCAATGCTCTGGTCCAGGAATTGCTGTGAACTTTGGGGAGCTCGAGGCATTTGTAGGGGATGCTGTGCCTTGTGCTGCTGTGAACTTCGTTGTCTCACAATTGAAAAGCTTATTGGAGATTCATGGTGGGAAACTTTGGTTGGTGGGCACAGCAGGAAACTCCGATATATATTCTAAGTTCTTAGCTTCGTTCCCAAATGTAGAAAAGGATTGGGATCTGCATCTGCTGACCATGACATCTGCCTCCCCTTCAATTGAAGGACTCTACTCCAAATCCAGTTTGATGGGGTCCTTTGTGCCATTTGGTGGGTTTTTTGCTGCACCTTCTGAATTCAAAAAACCAGTAGGTTCTACAACTTCGGCATCAAGTAACTCCACTAGCTTGCCATGGTTGCAACAGGTTAATGTGGATGCAAATAGGCGATTGGATGTGGCAAAGGAGGAATTTTCTGTACTGACCCACAAAAGCAAGTTACTGGTATGCAGTAACAATGCTTACTTGCCAACACTAGTagaattgaaaagaaagatACACGGTCTAAGATCTGAAGGGGAAGTTGGCAATAATGTACTTCCTCATCCAGTGCAGACTAGTGAAGAATTGACGAGTTTAAATACCACTACTATCTTGGGATTGCAAAAGAAATGGGGTGATATTTGCCAACGTCTTCATCACACCAGATCGCTGCCTGAATTTAATATATCTCACACAAGGCCTCAAGTTCCTTCTCATGAGGGCTTACCATTCAGTTTGGGTTTCAAGGAAAGCAGAAGTAAAGATGCAATTAATGCAATGCAATATTCTAGTCATAGTCCCTACACGCCTAAAGGGTTAAATAGTATTTGCCCATCCAAACAGATGTTGCAAGTTTCAGTACCTTCTGATACTATTTGTCTTAATACTGGAACTGACCGGGAAGCAATAGTTTCAAAGAGTCAGCAAATTGACGTGGTGAACCCTCGGGTTGCCCCTTCCCCTGTGGCTGATACGAGTCCGGTTAATCACAGATCATCTTCCTCCCTTACTTATGTGGCCACAGATTTGGGATTGGGAACAATATATACATCGGCCGCCGCTCAGGAGCCGAAAACTCCAAAAGTACGAGATCATAGAGAGAGTCTTCAGCACTTGTCAGATTCCATTTCAGCTGATTTTGATGCTGTGAATGAAAATAATTCACACCAAATTGCTCAATCTTCAGTATGCTCTGGTCCCAGCTTGGGAGGGAAATTGGATTCAGTAGATTTCAAGTCACTTAATCAACTTCTCAATGAAAGGGTTGGTTGGCAAGATGAGGCCATATATGCTGTCAACCGAACTTTGTCCCTTTGTAGATCTGGCGCTGGAAAGCATAGTGGCTTGCACCCTAGAGCAGACAAATGGCTTGCTTTCCTTGGACCTGATAGAGTTGGAAAGAAGAAAATTGCTTCAACACTTGCAGAGATAATATTGGGAAACACAGAAAGCCTCATCTGTGTGGATTTGAGCTTCCAGGAGAGGGGTTACCCATTAAACTCAATCTTTGAATGCCAAAAACCATTTTGTTATGATGTGCTTAGGAGGAAGACTGTTGTGGACTACATTGCTGGGGAGTTGAGTAAACAACCCCATTCAGTTGTCTTACTTGAAGATGTAGATAAAGCTGATTTTCTGGTGCAGAATAGTTTGTTCCAGGCAATTAGAACAGGTAAATTTCCAAACTCACACGGGAGGGAAATCAGCATTAATAACGCGGTATTTATCGTAACCTCTACGGTCTCTAAAGGCGATGTCTCTTGCCAATTGGAGAAAGAGCCTATGTTTTCCGAGGAAACAATCCTTGAAGCCAAAAGATGTCAAATGCAGTTATTACTTGGACATTCTCCAGAGGATGCCACAAGAAGCAGTGGCACAAATATCAGGGTAGTAAAACCGACAAAAGGTACCATTAAACCAATTATTCCGAATAAACGAAAGCTGTCCGAAAGAAGTGACTCCGTAGAGCAAGCAACAACATGCAAGGTACAGGTCCTGGAGGCATCAAGATCCTATCTGGATTTGAATATGCCTGTCCAGGAGGTTGAAGAGGACTGGTTAGATGATTTCTGTGGTCAAATTGATGGGAAAGTGGCTTTCAAGCCATTTGATTTTGATGCACTAgctgagaaaattttaaaaagcatTAGCCTGCAATTTGGAAGGATATTTGGGCCAGGGGTTATGCTGGAAATTGATTATGAAGTGATGGTACAGATACTAGCAGCTGCTTGGTTGTGTGAGAATAAAAACTTAGTGGAGGATTGGGTTGAAAATGTTCTTGGCAGAAGCTTCAATGAAGCCCTGAAAAAATACCACCCAGAAGCTCAGGATTTCATGAAACTAGTAACCTGTGAGGGCATTTTTGTGGAAGAGCAAGCTCCTGGAGCATGCCTTCCAGCTAAAATTAACctaaattga 3363 0.4535 MPTPVSAARQCLTEEAARALDDAVAVARRRSHAQTTSLHAVSALLALPSSTLREACTRARSCSYSPRLQFRALELSVGVSLDRLPTSKALEDDPPIANSLMAAIKRSQANQRRHPESFHLLQMQTQQQQQQAASFLKVELKHFILSILDDPIVSRVFGEAGFRSCDIKLALLQPPFSQASRFSRSRYPPPMFLCNLTGNSEMLRPSFNFPFVSNHGHEEADENCRRIAEVLVRTTQRNPLLVGVYAKGVLRSFTETVQRGRVGGGTTLPVEIAEINVICIEKEIAEFFVEGGSEEKMGLKLEDLSRAVEQCSGPGIAVNFGELEAFVGDAVPCAAVNFVVSQLKSLLEIHGGKLWLVGTAGNSDIYSKFLASFPNVEKDWDLHLLTMTSASPSIEGLYSKSSLMGSFVPFGGFFAAPSEFKKPVGSTTSASSNSTSLPWLQQVNVDANRRLDVAKEEFSVLTHKSKLLVCSNNAYLPTLVELKRKIHGLRSEGEVGNNVLPHPVQTSEELTSLNTTTILGLQKKWGDICQRLHHTRSLPEFNISHTRPQVPSHEGLPFSLGFKESRSKDAINAMQYSSHSPYTPKGLNSICPSKQMLQVSVPSDTICLNTGTDREAIVSKSQQIDVVNPRVAPSPVADTSPVNHRSSSSLTYVATDLGLGTIYTSAAAQEPKTPKVRDHRESLQHLSDSISADFDAVNENNSHQIAQSSVCSGPSLGGKLDSVDFKSLNQLLNERVGWQDEAIYAVNRTLSLCRSGAGKHSGLHPRADKWLAFLGPDRVGKKKIASTLAEIILGNTESLICVDLSFQERGYPLNSIFECQKPFCYDVLRRKTVVDYIAGELSKQPHSVVLLEDVDKADFLVQNSLFQAIRTGKFPNSHGREISINNAVFIVTSTVSKGDVSCQLEKEPMFSEETILEAKRCQMQLLLGHSPEDATRSSGTNIRVVKPTKGTIKPIIPNKRKLSERSDSVEQATTCKVQVLEASRSYLDLNMPVQEVEEDWLDDFCGQIDGKVAFKPFDFDALAEKILKSISLQFGRIFGPGVMLEIDYEVMVQILAAAWLCENKNLVEDWVENVLGRSFNEALKKYHPEAQDFMKLVTCEGIFVEEQAPGACLPAKINLN 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto9g2166 1120 Pfam AAA domain (Cdc48 subfamily) 772 906 IPR003959 GO:0005524|GO:0016887
Sto9g2166 1120 SUPERFAMILY Double Clp-N motif 12 118 IPR036628 -
Sto9g2166 1120 ProSiteProfiles Clp repeat (R) domain profile. 8 177 IPR004176 -
Sto9g2166 1120 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 721 1051 IPR027417 -
Sto9g2166 1120 Gene3D - 10 174 IPR036628 -
Sto9g2166 1120 PANTHER DOUBLE CLP-N MOTIF P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 507 1120 - -
Sto9g2166 1120 PANTHER DOUBLE CLP-N MOTIF P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 430 - -
Sto9g2166 1120 PANTHER DOUBLE CLP-N MOTIF P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 424 459 - -
Sto9g2166 1120 Gene3D - 715 1016 IPR027417 -
Sto9g2166 1120 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 771 789 IPR001270 GO:0005524
Sto9g2166 1120 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 850 868 IPR001270 GO:0005524
Sto9g2166 1120 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 883 897 IPR001270 GO:0005524
Sto9g2166 1120 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 430 - -
Sto9g2166 1120 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 507 1120 - -
Sto9g2166 1120 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 424 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto9g2166 Sto-Chr9 25361680 25366821 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto9g2166 - - gmx:100776148 1193.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto9g2166 9 25361680 25366821 Sto5g4333 5 52026487 52030501 CCT
Sto9g2166 9 25361680 25366821 Sto9g2166 9 25361680 25366821 ECH
Sto9g2166 9 25361680 25366821 Sto9g2544 9 28046176 28050551 ECH
Sto9g2166 9 25361680 25366821 Sto5g1501 5 10384378 10389421 ECH
Sto9g2166 9 25361680 25366821 Sto5g4333 5 52026487 52030501 ECH
Sto8g1119 8 7083430 7086430 Sto9g2166 9 25361680 25366821 ECH
Sto13g3014 13 34913968 34917301 Sto9g2166 9 25361680 25366821 ECH