Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele55g1194 ATGATTGCTGACATTTCGTTGAATCTTCGAGTTCAAGGACTAGGAGGCATGTACAGAGATCGAGGAGCAGTTGGGTCGAAATCGGAAGCGGGTTCCGTTGATCGGAAGCGAATCAATGACGTCCTGGACAAGCAGCTTGAGCGATCCTCGCCGTCGACATCTAGGACCATCAACGGCAAAGATAGGTCGGTACAATCCGTGCTTGCCGGCAAGCCACCCCATGATCACAGGGACTCACGTTCTGCTCCTGCCTCCAAGAACACCAACGTTTCAGATGAGGAATCTGAAACAGACAGTGAAGAGTCAGATGTCAGTGGTTCTGATGGCGATGACACGTCTTGGATTTCATGGTTCTGCAATCTGAGAGGAAATGAATTCTTTTGTGAGGTTGATGATGATTACATCCAAGATGACTTCAACCTCTGCGGATTAAGCAGTCAAGTACCTTACTATGATTATGCACTTGATTTAATTCTGGATGTTGAATCCTCCCACGGCGACATGTTCTCAGAGGAACAAAATGAATTAATTGAATCAGCAGCAGAGATGCTATATGGTCTAATTCATGCCCGATGCATCCTGACAAGCAAAGGAATGGCTGCTATGCTGGACAAGTACAAGAACTATGATTTTGGTAGATGCCCCAGGGTTTACTGCTCTGGTCAACCCTGCCTTCCAGTTGGTCAGTCAGACATTCCCAGATCAAGTACTGTGAAAATATACTGCCCTCGGTGCGAAGACATTTACTATCCTCGGTCAAAGTATCAAGGCAACATTGATGGAGCTTATTTTGGGACTACATTTCCTCATCTCTTCCTGATGACATACGGACAACTGGAGCCACAGAAACCATCGCAGAGCTATGTTCCTAGAGTTCAGCAGATGATGATAAGTTTTTGCACATCAGTACACAACCTAGACGAGCATGTTGTAAAGAAATATGCAGGCGTGTCAGTCAAGCAAGTGCTTGGTCTCTCACTTTCAGCTTCGAATTCAGTGAACAAGTTCATGGGTTTCTTTAATGCTCTTTCTGTATTCTTGCCATTAGCTTCTTTCTCTCCTTGCTGTTTTAAGATTGTGATTACAAATCCCCTGGGATAA 1101 0.4505 MIADISLNLRVQGLGGMYRDRGAVGSKSEAGSVDRKRINDVLDKQLERSSPSTSRTINGKDRSVQSVLAGKPPHDHRDSRSAPASKNTNVSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFSEEQNELIESAAEMLYGLIHARCILTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLEPQKPSQSYVPRVQQMMISFCTSVHNLDEHVVKKYAGVSVKQVLGLSLSASNSVNKFMGFFNALSVFLPLASFSPCCFKIVITNPLG 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele55g1194 366 PRINTS Casein kinase II regulatory subunit family signature 113 129 IPR000704 GO:0005956|GO:0019887
Lele55g1194 366 PRINTS Casein kinase II regulatory subunit family signature 185 206 IPR000704 GO:0005956|GO:0019887
Lele55g1194 366 PRINTS Casein kinase II regulatory subunit family signature 130 144 IPR000704 GO:0005956|GO:0019887
Lele55g1194 366 PRINTS Casein kinase II regulatory subunit family signature 260 277 IPR000704 GO:0005956|GO:0019887
Lele55g1194 366 PRINTS Casein kinase II regulatory subunit family signature 232 253 IPR000704 GO:0005956|GO:0019887
Lele55g1194 366 PRINTS Casein kinase II regulatory subunit family signature 210 231 IPR000704 GO:0005956|GO:0019887
Lele55g1194 366 PANTHER CASEIN KINASE II SUBUNIT BETA 92 297 IPR000704 GO:0005956|GO:0019887
Lele55g1194 366 Gene3D - 211 285 - -
Lele55g1194 366 Pfam Casein kinase II regulatory subunit 113 292 IPR000704 GO:0005956|GO:0019887
Lele55g1194 366 ProSitePatterns Casein kinase II regulatory subunit signature. 214 245 IPR000704 GO:0005956|GO:0019887
Lele55g1194 366 SMART CK_II_beta_2 113 293 IPR000704 GO:0005956|GO:0019887
Lele55g1194 366 MobiDBLite consensus disorder prediction 18 109 - -
Lele55g1194 366 FunFam Casein kinase II subunit beta 211 285 - -
Lele55g1194 366 MobiDBLite consensus disorder prediction 45 63 - -
Lele55g1194 366 MobiDBLite consensus disorder prediction 30 44 - -
Lele55g1194 366 FunFam Casein kinase II subunit beta 106 210 - -
Lele55g1194 366 SUPERFAMILY Casein kinase II beta subunit 111 292 IPR035991 GO:0005956|GO:0019887
Lele55g1194 366 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 106 210 IPR016149 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele55g1194 Lele-ChrLele55 18548899 18551814 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0490 50 2892827 2897298 Lele55g1194 55 18548899 18551814 CCT
Lele52g0488 52 2964770 2969230 Lele55g1194 55 18548899 18551814 CCT
Lele49g0451 49 2703182 2708721 Lele55g1194 55 18548899 18551814 CCT
Lele53g0294 53 2470140 2472745 Lele55g1194 55 18548899 18551814 hybridization
Lele54g0293 54 2489242 2491692 Lele55g1194 55 18548899 18551814 hybridization