Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g0294 ATGATTGCTGACATTTCGTTGAATCTTCGAGTTGAAGGACTAGGAAGCATGTACAGAGATCGAGGAGCAGTTGGATCGAAATCCGAAGTGGGTTCCGTTGATCGGAAGCGAATCAATGACGTCCTGGACAAGCAGCTTGAGCGATCCTCGCCGTCGACATCTAGGACCATCAACGGCAAGGATAGGTCTGTACAATCCGTGCTAGCCGGCAAGCCACCCCATGATCACAGGGACCCACGTTCTGCTACCGTCTCCAAGAACACCAACGCTTCATATGAGGAATCTGAAACAGACAGTGAAGAGTCAGATGTCAGTGGTTCTGATGGAGATGACACATCTTGGATTTCATGGTTCTGCAATCTGAGAGGAAACGAATTCTTTTGTGAGGTTGATGATGATTACATCCAAGATGACTTCAACCTCTGCGGATTAAGCAGTCAAGTACCTTACTATGATTATGCACTTGATTTAATTCTGGATGTTGAATCCTCCCACAGTGACATGTTCACAGAGGAACAGAATGAATTAATTGAATCAGCAGCAGAGATGCTATATGGTCTAATTCATGCCCGATACATCTTGACAAGCAAAGGAATGGCTGCTATGCTGGACAAGTACAAGAACTATGATTTTGGCAGATGCCCCAGGGTTTACTGCTCTGGTCAACCCTGCGTTCCAGTTGGTCAGTCAGACATTCCCAGATCAAGTACTGTGAAAATATACTGCCCTCGGTGTGAAGACATTTACTATCCTCGGTCAAAGTATCAAGGCAACATTGATGGAGCTTATTTTGGGACTACATTTCCTCATCTCTTCCTGATGACATACGGACAACTGGAGCCACAGAAAGCATTGCAGAGCTATGTTCCTAGAGTTTTTGGTTTCAAACTTCACAAGCCATGA 903 0.4518 MIADISLNLRVEGLGSMYRDRGAVGSKSEVGSVDRKRINDVLDKQLERSSPSTSRTINGKDRSVQSVLAGKPPHDHRDPRSATVSKNTNASYEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDDYIQDDFNLCGLSSQVPYYDYALDLILDVESSHSDMFTEEQNELIESAAEMLYGLIHARYILTSKGMAAMLDKYKNYDFGRCPRVYCSGQPCVPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLEPQKALQSYVPRVFGFKLHKP 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g0294 300 MobiDBLite consensus disorder prediction 45 63 - -
Lele53g0294 300 PANTHER CASEIN KINASE II SUBUNIT BETA 92 299 IPR000704 GO:0005956|GO:0019887
Lele53g0294 300 FunFam Casein kinase II subunit beta 106 210 - -
Lele53g0294 300 Pfam Casein kinase II regulatory subunit 113 296 IPR000704 GO:0005956|GO:0019887
Lele53g0294 300 SUPERFAMILY Casein kinase II beta subunit 111 299 IPR035991 GO:0005956|GO:0019887
Lele53g0294 300 FunFam Casein kinase II subunit beta 211 285 - -
Lele53g0294 300 Gene3D protein kinase ck2 holoenzyme, chain C, domain 1 106 210 IPR016149 GO:0005956|GO:0019887
Lele53g0294 300 Gene3D - 211 285 - -
Lele53g0294 300 MobiDBLite consensus disorder prediction 41 109 - -
Lele53g0294 300 PRINTS Casein kinase II regulatory subunit family signature 232 253 IPR000704 GO:0005956|GO:0019887
Lele53g0294 300 PRINTS Casein kinase II regulatory subunit family signature 210 231 IPR000704 GO:0005956|GO:0019887
Lele53g0294 300 PRINTS Casein kinase II regulatory subunit family signature 260 277 IPR000704 GO:0005956|GO:0019887
Lele53g0294 300 PRINTS Casein kinase II regulatory subunit family signature 185 206 IPR000704 GO:0005956|GO:0019887
Lele53g0294 300 PRINTS Casein kinase II regulatory subunit family signature 130 144 IPR000704 GO:0005956|GO:0019887
Lele53g0294 300 PRINTS Casein kinase II regulatory subunit family signature 113 129 IPR000704 GO:0005956|GO:0019887
Lele53g0294 300 SMART CK_II_beta_2 113 296 IPR000704 GO:0005956|GO:0019887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g0294 Lele-ChrLele53 2470140 2472745 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0490 50 2892827 2897298 Lele53g0294 53 2470140 2472745 CCT
Lele52g0488 52 2964770 2969230 Lele53g0294 53 2470140 2472745 CCT
Lele49g0451 49 2703182 2708721 Lele53g0294 53 2470140 2472745 CCT
Lele53g0294 53 2470140 2472745 Lele55g1194 55 18548899 18551814 hybridization
Lele53g0294 53 2470140 2472745 Lele56g1146 56 14918678 14921170 hybridization